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A cfDNA methylation-based tissue-of-origin classifier for cancers of unknown primary.
Conway AM, Pearce SP, Clipson A, Hill SM, Chemi F, Slane-Tan D, Ferdous S, Hossain ASMM, Kamieniecka K, White DJ, Mitchell C, Kerr A, Krebs MG, Brady G, Dive C, Cook N, Rothwell DG. Conway AM, et al. Among authors: hossain asmm. Nat Commun. 2024 Apr 17;15(1):3292. doi: 10.1038/s41467-024-47195-7. Nat Commun. 2024. PMID: 38632274 Free PMC article.
The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs.
Murray GGR, Hossain ASMM, Miller EL, Bruchmann S, Balmer AJ, Matuszewska M, Herbert J, Hadjirin NF, Mugabi R, Li G, Ferrando ML, Fernandes de Oliveira IM, Nguyen T, Yen PLK, Phuc HD, Zaw Moe A, Su Wai T, Gottschalk M, Aragon V, Valentin-Weigand P, Heegaard PMH, Vrieling M, Thein Maw M, Thidar Myint H, Tun Win Y, Thi Hoa N, Bentley SD, Clavijo MJ, Wells JM, Tucker AW, Weinert LA. Murray GGR, et al. Among authors: hossain asmm. Proc Natl Acad Sci U S A. 2023 Nov 21;120(47):e2307773120. doi: 10.1073/pnas.2307773120. Epub 2023 Nov 14. Proc Natl Acad Sci U S A. 2023. PMID: 37963246 Free PMC article.
Soluble guanylate cyclase signalling mediates etoposide resistance in progressing small cell lung cancer.
Schenk MW, Humphrey S, Hossain ASMM, Revill M, Pearsall S, Lallo A, Brown S, Bratt S, Galvin M, Descamps T, Zhou C, Pearce SP, Priest L, Greenhalgh M, Chaturvedi A, Kerr A, Blackhall F, Dive C, Frese KK. Schenk MW, et al. Among authors: hossain asmm. Nat Commun. 2021 Nov 17;12(1):6652. doi: 10.1038/s41467-021-26823-6. Nat Commun. 2021. PMID: 34789728 Free PMC article.
Mutation rate dynamics reflect ecological change in an emerging zoonotic pathogen.
Murray GGR, Balmer AJ, Herbert J, Hadjirin NF, Kemp CL, Matuszewska M, Bruchmann S, Hossain ASMM, Gottschalk M, Tucker AW, Miller E, Weinert LA. Murray GGR, et al. Among authors: hossain asmm. PLoS Genet. 2021 Nov 8;17(11):e1009864. doi: 10.1371/journal.pgen.1009864. eCollection 2021 Nov. PLoS Genet. 2021. PMID: 34748531 Free PMC article.
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
Assigning and visualizing germline genes in antibody repertoires.
Frost SD, Murrell B, Hossain AS, Silverman GJ, Pond SL. Frost SD, et al. Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676):20140240. doi: 10.1098/rstb.2014.0240. Philos Trans R Soc Lond B Biol Sci. 2015. PMID: 26194754 Free PMC article.