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Constructing small genome graphs via string compression.
Qiu Y, Kingsford C. Qiu Y, et al. Among authors: kingsford c. Bioinformatics. 2021 Jul 12;37(Suppl_1):i205-i213. doi: 10.1093/bioinformatics/btab281. Bioinformatics. 2021. PMID: 34252955 Free PMC article.
Improving Hi-C contact matrices using genome graphs.
Shen Y, Yu L, Qiu Y, Zhang T, Kingsford C. Shen Y, et al. Among authors: kingsford c. bioRxiv [Preprint]. 2023 Nov 10:2023.11.08.566275. doi: 10.1101/2023.11.08.566275. bioRxiv. 2023. PMID: 37986943 Free PMC article. Preprint.
Context-aware seeds for read mapping.
Xin H, Shao M, Kingsford C. Xin H, et al. Among authors: kingsford c. Algorithms Mol Biol. 2020 May 23;15:10. doi: 10.1186/s13015-020-00172-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32489399 Free PMC article.
Exact transcript quantification over splice graphs.
Ma C, Zheng H, Kingsford C. Ma C, et al. Among authors: kingsford c. Algorithms Mol Biol. 2021 May 10;16(1):5. doi: 10.1186/s13015-021-00184-7. Algorithms Mol Biol. 2021. PMID: 33971903 Free PMC article.
Identification of alternative topological domains in chromatin.
Filippova D, Patro R, Duggal G, Kingsford C. Filippova D, et al. Among authors: kingsford c. Algorithms Mol Biol. 2014 May 3;9:14. doi: 10.1186/1748-7188-9-14. eCollection 2014. Algorithms Mol Biol. 2014. PMID: 24868242 Free PMC article.
85 results