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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
---|---|
2020 | 1 |
2021 | 2 |
2022 | 1 |
2023 | 3 |
2024 | 0 |
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7 results
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Page 1
Computational approaches to predict protein functional families and functional sites.
Curr Opin Struct Biol. 2021 Oct;70:108-122. doi: 10.1016/j.sbi.2021.05.012. Epub 2021 Jul 2.
Curr Opin Struct Biol. 2021.
PMID: 34225010
Review.
CATH functional families predict functional sites in proteins.
Das S, Scholes HM, Sen N, Orengo C.
Das S, et al.
Bioinformatics. 2021 May 23;37(8):1099-1106. doi: 10.1093/bioinformatics/btaa937.
Bioinformatics. 2021.
PMID: 33135053
Free PMC article.
Item in Clipboard
ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.
Vallat B, Tauriello G, Bienert S, Haas J, Webb BM, Žídek A, Zheng W, Peisach E, Piehl DW, Anischanka I, Sillitoe I, Tolchard J, Varadi M, Baker D, Orengo C, Zhang Y, Hoch JC, Kurisu G, Patwardhan A, Velankar S, Burley SK, Sali A, Schwede T, Berman HM, Westbrook JD.
Vallat B, et al.
J Mol Biol. 2023 Jul 15;435(14):168021. doi: 10.1016/j.jmb.2023.168021. Epub 2023 Feb 23.
J Mol Biol. 2023.
PMID: 36828268
Free article.
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Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.
Sen N, Anishchenko I, Bordin N, Sillitoe I, Velankar S, Baker D, Orengo C.
Sen N, et al.
Brief Bioinform. 2022 Jul 18;23(4):bbac187. doi: 10.1093/bib/bbac187.
Brief Bioinform. 2022.
PMID: 35641150
Free PMC article.
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AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms.
Bordin N, Sillitoe I, Nallapareddy V, Rauer C, Lam SD, Waman VP, Sen N, Heinzinger M, Littmann M, Kim S, Velankar S, Steinegger M, Rost B, Orengo C.
Bordin N, et al.
Commun Biol. 2023 Feb 8;6(1):160. doi: 10.1038/s42003-023-04488-9.
Commun Biol. 2023.
PMID: 36755055
Free PMC article.
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CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Nallapareddy V, Bordin N, Sillitoe I, Heinzinger M, Littmann M, Waman VP, Sen N, Rost B, Orengo C.
Nallapareddy V, et al.
Bioinformatics. 2023 Jan 1;39(1):btad029. doi: 10.1093/bioinformatics/btad029.
Bioinformatics. 2023.
PMID: 36648327
Free PMC article.
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SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals.
Lam SD, Bordin N, Waman VP, Scholes HM, Ashford P, Sen N, van Dorp L, Rauer C, Dawson NL, Pang CSM, Abbasian M, Sillitoe I, Edwards SJL, Fraternali F, Lees JG, Santini JM, Orengo CA.
Lam SD, et al.
Sci Rep. 2020 Oct 5;10(1):16471. doi: 10.1038/s41598-020-71936-5.
Sci Rep. 2020.
PMID: 33020502
Free PMC article.
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