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Year Number of Results
2008 1
2009 3
2011 1
2012 4
2013 11
2014 2
2015 3
2016 2
2017 5
2018 6
2019 5
2020 2
2021 2
2024 0

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Page 1
COPASI and its applications in biotechnology.
Bergmann FT, Hoops S, Klahn B, Kummer U, Mendes P, Pahle J, Sahle S. Bergmann FT, et al. J Biotechnol. 2017 Nov 10;261:215-220. doi: 10.1016/j.jbiotec.2017.06.1200. Epub 2017 Jun 24. J Biotechnol. 2017. PMID: 28655634 Free PMC article. Review.
Computational modeling of heterogeneity and function of CD4+ T cells.
Carbo A, Hontecillas R, Andrew T, Eden K, Mei Y, Hoops S, Bassaganya-Riera J. Carbo A, et al. Front Cell Dev Biol. 2014 Jul 29;2:31. doi: 10.3389/fcell.2014.00031. eCollection 2014. Front Cell Dev Biol. 2014. PMID: 25364738 Free PMC article. Review.
Reproducible Research Using Biomodels.
Mendes P. Mendes P. Bull Math Biol. 2018 Dec;80(12):3081-3087. doi: 10.1007/s11538-018-0498-z. Epub 2018 Sep 6. Bull Math Biol. 2018. PMID: 30191472 Free PMC article.
A systems biology view of cancer.
Laubenbacher R, Hower V, Jarrah A, Torti SV, Shulaev V, Mendes P, Torti FM, Akman S. Laubenbacher R, et al. Biochim Biophys Acta. 2009 Dec;1796(2):129-39. doi: 10.1016/j.bbcan.2009.06.001. Epub 2009 Jun 6. Biochim Biophys Acta. 2009. PMID: 19505535 Free PMC article. Review.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
A general map of iron metabolism and tissue-specific subnetworks.
Hower V, Mendes P, Torti FM, Laubenbacher R, Akman S, Shulaev V, Torti SV. Hower V, et al. Mol Biosyst. 2009 May;5(5):422-43. doi: 10.1039/b816714c. Epub 2009 Mar 6. Mol Biosyst. 2009. PMID: 19381358 Free PMC article. Review.
Recon 2.2: from reconstruction to model of human metabolism.
Swainston N, Smallbone K, Hefzi H, Dobson PD, Brewer J, Hanscho M, Zielinski DC, Ang KS, Gardiner NJ, Gutierrez JM, Kyriakopoulos S, Lakshmanan M, Li S, Liu JK, Martínez VS, Orellana CA, Quek LE, Thomas A, Zanghellini J, Borth N, Lee DY, Nielsen LK, Kell DB, Lewis NE, Mendes P. Swainston N, et al. Metabolomics. 2016;12:109. doi: 10.1007/s11306-016-1051-4. Epub 2016 Jun 7. Metabolomics. 2016. PMID: 27358602 Free PMC article.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
44 results