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2011 2
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Mutation effects predicted from sequence co-variation.
Hopf TA, Ingraham JB, Poelwijk FJ, Schärfe CP, Springer M, Sander C, Marks DS. Hopf TA, et al. Nat Biotechnol. 2017 Feb;35(2):128-135. doi: 10.1038/nbt.3769. Epub 2017 Jan 16. Nat Biotechnol. 2017. PMID: 28092658 Free PMC article.
Protein Structure from Experimental Evolution.
Stiffler MA, Poelwijk FJ, Brock KP, Stein RR, Riesselman A, Teyra J, Sidhu SS, Marks DS, Gauthier NP, Sander C. Stiffler MA, et al. Cell Syst. 2020 Jan 22;10(1):15-24.e5. doi: 10.1016/j.cels.2019.11.008. Epub 2019 Dec 11. Cell Syst. 2020. PMID: 31838147 Free article.
The EVcouplings Python framework for coevolutionary sequence analysis.
Hopf TA, Green AG, Schubert B, Mersmann S, Schärfe CPI, Ingraham JB, Toth-Petroczy A, Brock K, Riesselman AJ, Palmedo P, Kang C, Sheridan R, Draizen EJ, Dallago C, Sander C, Marks DS. Hopf TA, et al. Bioinformatics. 2019 May 1;35(9):1582-1584. doi: 10.1093/bioinformatics/bty862. Bioinformatics. 2019. PMID: 30304492 Free PMC article.
Inferring protein 3D structure from deep mutation scans.
Rollins NJ, Brock KP, Poelwijk FJ, Stiffler MA, Gauthier NP, Sander C, Marks DS. Rollins NJ, et al. Nat Genet. 2019 Jul;51(7):1170-1176. doi: 10.1038/s41588-019-0432-9. Epub 2019 Jun 17. Nat Genet. 2019. PMID: 31209393 Free PMC article.
30 results