R01 GM113708/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2015	3
2016	6
2017	3
2018	3
2021	2
2024	0

1

Multi-scale chromatin state annotation using a hierarchical hidden Markov model.

Marco E, Meuleman W, Huang J, Glass K, Pinello L, Wang J, Kellis M, Yuan GC. Marco E, et al. Nat Commun. 2017 Apr 7;8:15011. doi: 10.1038/ncomms15011. Nat Commun. 2017. PMID: 28387224 Free PMC article.

2

Regulatory genomic circuitry of human disease loci by integrative epigenomics.

Boix CA, James BT, Park YP, Meuleman W, Kellis M. Boix CA, et al. Nature. 2021 Feb;590(7845):300-307. doi: 10.1038/s41586-020-03145-z. Epub 2021 Feb 3. Nature. 2021. PMID: 33536621 Free PMC article.

3

Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci.

Onuchic V, Lurie E, Carrero I, Pawliczek P, Patel RY, Rozowsky J, Galeev T, Huang Z, Altshuler RC, Zhang Z, Harris RA, Coarfa C, Ashmore L, Bertol JW, Fakhouri WD, Yu F, Kellis M, Gerstein M, Milosavljevic A. Onuchic V, et al. Science. 2018 Sep 28;361(6409):eaar3146. doi: 10.1126/science.aar3146. Epub 2018 Aug 23. Science. 2018. PMID: 30139913 Free PMC article.

4

Evidence of reduced recombination rate in human regulatory domains.

Liu Y, Sarkar A, Kheradpour P, Ernst J, Kellis M. Liu Y, et al. Genome Biol. 2017 Oct 20;18(1):193. doi: 10.1186/s13059-017-1308-x. Genome Biol. 2017. PMID: 29058599 Free PMC article.

5

Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes.

Miyamoto K, Nguyen KT, Allen GE, Jullien J, Kumar D, Otani T, Bradshaw CR, Livesey FJ, Kellis M, Gurdon JB. Miyamoto K, et al. Cell Rep. 2018 Jul 10;24(2):304-311. doi: 10.1016/j.celrep.2018.06.030. Cell Rep. 2018. PMID: 29996092 Free PMC article.

6

High-throughput 5' UTR engineering for enhanced protein production in non-viral gene therapies.

Cao J, Novoa EM, Zhang Z, Chen WCW, Liu D, Choi GCG, Wong ASL, Wehrspaun C, Kellis M, Lu TK. Cao J, et al. Nat Commun. 2021 Jul 6;12(1):4138. doi: 10.1038/s41467-021-24436-7. Nat Commun. 2021. PMID: 34230498 Free PMC article.

7

MicroRNA and gene expression changes in unruptured human cerebral aneurysms.

Bekelis K, Kerley-Hamilton JS, Teegarden A, Tomlinson CR, Kuintzle R, Simmons N, Singer RJ, Roberts DW, Kellis M, Hendrix DA. Bekelis K, et al. J Neurosurg. 2016 Dec;125(6):1390-1399. doi: 10.3171/2015.11.JNS151841. Epub 2016 Feb 26. J Neurosurg. 2016. PMID: 26918470 Free PMC article.

8

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo.

Le Gros MA, Clowney EJ, Magklara A, Yen A, Markenscoff-Papadimitriou E, Colquitt B, Myllys M, Kellis M, Lomvardas S, Larabell CA. Le Gros MA, et al. Cell Rep. 2016 Nov 15;17(8):2125-2136. doi: 10.1016/j.celrep.2016.10.060. Cell Rep. 2016. PMID: 27851973 Free PMC article.

9

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.

Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S. Marbach D, et al. Nat Methods. 2016 Apr;13(4):366-70. doi: 10.1038/nmeth.3799. Epub 2016 Mar 7. Nat Methods. 2016. PMID: 26950747 Free PMC article.

10

Context influences on TALE-DNA binding revealed by quantitative profiling.

Rogers JM, Barrera LA, Reyon D, Sander JD, Kellis M, Joung JK, Bulyk ML. Rogers JM, et al. Nat Commun. 2015 Jun 11;6:7440. doi: 10.1038/ncomms8440. Nat Commun. 2015. PMID: 26067805 Free PMC article.

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