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Molecular properties of epimutation hotspots.
Hazarika RR, Serra M, Zhang Z, Zhang Y, Schmitz RJ, Johannes F. Hazarika RR, et al. Nat Plants. 2022 Feb;8(2):146-156. doi: 10.1038/s41477-021-01086-7. Epub 2022 Jan 27. Nat Plants. 2022. PMID: 35087209 Free PMC article.
An evolutionary epigenetic clock in plants.
Yao N, Zhang Z, Yu L, Hazarika R, Yu C, Jang H, Smith LM, Ton J, Liu L, Stachowicz J, Reusch T, Schmitz RJ, Johannes F. Yao N, et al. bioRxiv [Preprint]. 2023 Mar 16:2023.03.15.532766. doi: 10.1101/2023.03.15.532766. bioRxiv. 2023. PMID: 36993545 Free PMC article. Updated. Preprint.
Quality control and evaluation of plant epigenomics data.
Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Schmitz RJ, et al. Plant Cell. 2022 Jan 20;34(1):503-513. doi: 10.1093/plcell/koab255. Plant Cell. 2022. PMID: 34648025 Free PMC article.
Anno genominis XX: 20 years of Arabidopsis genomics.
Provart NJ, Brady SM, Parry G, Schmitz RJ, Queitsch C, Bonetta D, Waese J, Schneeberger K, Loraine AE. Provart NJ, et al. Plant Cell. 2021 May 31;33(4):832-845. doi: 10.1093/plcell/koaa038. Plant Cell. 2021. PMID: 33793861 Free PMC article. Review.
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
Hofmeister BT, Denkena J, Colomé-Tatché M, Shahryary Y, Hazarika R, Grimwood J, Mamidi S, Jenkins J, Grabowski PP, Sreedasyam A, Shu S, Barry K, Lail K, Adam C, Lipzen A, Sorek R, Kudrna D, Talag J, Wing R, Hall DW, Jacobsen D, Tuskan GA, Schmutz J, Johannes F, Schmitz RJ. Hofmeister BT, et al. Genome Biol. 2020 Oct 6;21(1):259. doi: 10.1186/s13059-020-02162-5. Genome Biol. 2020. PMID: 33023654 Free PMC article.