R01 HG002238/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2001	4
2002	2
2003	10
2004	9
2005	7
2006	6
2007	9
2008	5
2009	6
2011	2
2012	1
2024	0

1

Cross-species sequence comparisons: a review of methods and available resources.

Frazer KA, Elnitski L, Church DM, Dubchak I, Hardison RC. Frazer KA, et al. Genome Res. 2003 Jan;13(1):1-12. doi: 10.1101/gr.222003. Genome Res. 2003. PMID: 12529301 Free PMC article. Review.

2

Human-mouse alignments with BLASTZ.

Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Schwartz S, et al. Genome Res. 2003 Jan;13(1):103-7. doi: 10.1101/gr.809403. Genome Res. 2003. PMID: 12529312 Free PMC article.

3

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.

Wu W, Cheng Y, Keller CA, Ernst J, Kumar SA, Mishra T, Morrissey C, Dorman CM, Chen KB, Drautz D, Giardine B, Shibata Y, Song L, Pimkin M, Crawford GE, Furey TS, Kellis M, Miller W, Taylor J, Schuster SC, Zhang Y, Chiaromonte F, Blobel GA, Weiss MJ, Hardison RC. Wu W, et al. Genome Res. 2011 Oct;21(10):1659-71. doi: 10.1101/gr.125088.111. Epub 2011 Jul 27. Genome Res. 2011. PMID: 21795386 Free PMC article.

4

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly.

Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. Blankenberg D, et al. Genome Res. 2007 Jun;17(6):960-4. doi: 10.1101/gr.5578007. Genome Res. 2007. PMID: 17568012 Free PMC article.

5

The genome-wide determinants of human and chimpanzee microsatellite evolution.

Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. Kelkar YD, et al. Genome Res. 2008 Jan;18(1):30-8. doi: 10.1101/gr.7113408. Epub 2007 Nov 21. Genome Res. 2008. PMID: 18032720 Free PMC article.

6

Mulan: multiple-sequence local alignment and visualization for studying function and evolution.

Ovcharenko I, Loots GG, Giardine BM, Hou M, Ma J, Hardison RC, Stubbs L, Miller W. Ovcharenko I, et al. Genome Res. 2005 Jan;15(1):184-94. doi: 10.1101/gr.3007205. Epub 2004 Dec 8. Genome Res. 2005. PMID: 15590941 Free PMC article.

7

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences.

Schwartz S, Elnitski L, Li M, Weirauch M, Riemer C, Smit A; NISC Comparative Sequencing Program; Green ED, Hardison RC, Miller W. Schwartz S, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3518-24. doi: 10.1093/nar/gkg579. Nucleic Acids Res. 2003. PMID: 12824357 Free PMC article.

8

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Addo-Quaye C, Miller W, Axtell MJ. Addo-Quaye C, et al. Bioinformatics. 2009 Jan 1;25(1):130-1. doi: 10.1093/bioinformatics/btn604. Epub 2008 Nov 18. Bioinformatics. 2009. PMID: 19017659 Free PMC article.

9

Evolution and functional classification of vertebrate gene deserts.

Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, Stubbs L. Ovcharenko I, et al. Genome Res. 2005 Jan;15(1):137-45. doi: 10.1101/gr.3015505. Epub 2004 Dec 8. Genome Res. 2005. PMID: 15590943 Free PMC article.

10

Galaxy: a platform for interactive large-scale genome analysis.

Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Giardine B, et al. Genome Res. 2005 Oct;15(10):1451-5. doi: 10.1101/gr.4086505. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169926 Free PMC article.

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