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Kleat: cleavage site analysis of transcriptomes.
Pac Symp Biocomput. 2015:347-58.
Pac Symp Biocomput. 2015.
PMID: 25592595
Free PMC article.
DIDA: Distributed Indexing Dispatched Alignment.
Mohamadi H, Vandervalk BP, Raymond A, Jackman SD, Chu J, Breshears CP, Birol I.
Mohamadi H, et al.
PLoS One. 2015 Apr 29;10(4):e0126409. doi: 10.1371/journal.pone.0126409. eCollection 2015.
PLoS One. 2015.
PMID: 25923767
Free PMC article.
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LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I.
Warren RL, et al.
Gigascience. 2015 Aug 4;4:35. doi: 10.1186/s13742-015-0076-3. eCollection 2015.
Gigascience. 2015.
PMID: 26244089
Free PMC article.
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Sealer: a scalable gap-closing application for finishing draft genomes.
Paulino D, Warren RL, Vandervalk BP, Raymond A, Jackman SD, Birol I.
Paulino D, et al.
BMC Bioinformatics. 2015 Jul 25;16(1):230. doi: 10.1186/s12859-015-0663-4.
BMC Bioinformatics. 2015.
PMID: 26209068
Free PMC article.
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Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Vandervalk BP, Yang C, Xue Z, Raghavan K, Chu J, Mohamadi H, Jackman SD, Chiu R, Warren RL, Birol I.
Vandervalk BP, et al.
BMC Med Genomics. 2015;8 Suppl 3(Suppl 3):S1. doi: 10.1186/1755-8794-8-S3-S1. Epub 2015 Sep 23.
BMC Med Genomics. 2015.
PMID: 26399504
Free PMC article.
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