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Integrative genomics of chronic obstructive pulmonary disease.
Hobbs BD, Hersh CP. Hobbs BD, et al. Biochem Biophys Res Commun. 2014 Sep 19;452(2):276-86. doi: 10.1016/j.bbrc.2014.07.086. Epub 2014 Jul 29. Biochem Biophys Res Commun. 2014. PMID: 25078622 Free PMC article. Review.
lionessR: single sample network inference in R.
Kuijjer ML, Hsieh PH, Quackenbush J, Glass K. Kuijjer ML, et al. BMC Cancer. 2019 Oct 25;19(1):1003. doi: 10.1186/s12885-019-6235-7. BMC Cancer. 2019. PMID: 31653243 Free PMC article.
Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci.
Castaldi PJ, Cho MH, Zhou X, Qiu W, Mcgeachie M, Celli B, Bakke P, Gulsvik A, Lomas DA, Crapo JD, Beaty TH, Rennard S, Harshfield B, Lange C, Singh D, Tal-Singer R, Riley JH, Quackenbush J, Raby BA, Carey VJ, Silverman EK, Hersh CP. Castaldi PJ, et al. Hum Mol Genet. 2015 Feb 15;24(4):1200-10. doi: 10.1093/hmg/ddu525. Epub 2014 Oct 14. Hum Mol Genet. 2015. PMID: 25315895 Free PMC article.
A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma.
Sharma A, Menche J, Huang CC, Ort T, Zhou X, Kitsak M, Sahni N, Thibault D, Voung L, Guo F, Ghiassian SD, Gulbahce N, Baribaud F, Tocker J, Dobrin R, Barnathan E, Liu H, Panettieri RA Jr, Tantisira KG, Qiu W, Raby BA, Silverman EK, Vidal M, Weiss ST, Barabási AL. Sharma A, et al. Hum Mol Genet. 2015 Jun 1;24(11):3005-20. doi: 10.1093/hmg/ddv001. Epub 2015 Jan 12. Hum Mol Genet. 2015. PMID: 25586491 Free PMC article.