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Optimized single-nucleus transcriptional profiling by combinatorial indexing.
Martin BK, Qiu C, Nichols E, Phung M, Green-Gladden R, Srivatsan S, Blecher-Gonen R, Beliveau BJ, Trapnell C, Cao J, Shendure J. Martin BK, et al. Nat Protoc. 2023 Jan;18(1):188-207. doi: 10.1038/s41596-022-00752-0. Epub 2022 Oct 19. Nat Protoc. 2023. PMID: 36261634 Free PMC article. Review.
Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.
Tsue AF, Kania EE, Lei DQ, Fields R, McGann CD, Hershberg E, Deng X, Kihiu M, Ong SE, Disteche CM, Kugel S, Beliveau BJ, Schweppe DK, Shechner DM. Tsue AF, et al. bioRxiv [Preprint]. 2023 Jan 20:2023.01.19.524825. doi: 10.1101/2023.01.19.524825. bioRxiv. 2023. PMID: 36711823 Free PMC article. Preprint.
Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming.
Generoso SF, Neguembor MV, Hershberg EA, Sadreyev RI, Kurimoto K, Yabuta Y, Ricci R, Audergon P, Bauer M, Saitou M, Hochedlinger K, Beliveau BJ, Cosma MP, Lee JT, Payer B. Generoso SF, et al. Proc Natl Acad Sci U S A. 2023 Jan 24;120(4):e2213810120. doi: 10.1073/pnas.2213810120. Epub 2023 Jan 20. Proc Natl Acad Sci U S A. 2023. PMID: 36669113 Free PMC article.