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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
---|---|
2022 | 2 |
2023 | 2 |
2024 | 2 |
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6 results
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Page 1
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550582. doi: 10.1101/2023.07.25.550582.
bioRxiv. 2023.
PMID: 37546854
Free PMC article.
Preprint.
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.
de Souza VBC, Jordan BT, Tseng E, Nelson EA, Hirschi KK, Sheynkman G, Robinson MD.
de Souza VBC, et al.
Genome Biol. 2023 Apr 24;24(1):91. doi: 10.1186/s13059-023-02923-y.
Genome Biol. 2023.
PMID: 37095564
Free PMC article.
Item in Clipboard
Enhanced protein isoform characterization through long-read proteogenomics.
Miller RM, Jordan BT, Mehlferber MM, Jeffery ED, Chatzipantsiou C, Kaur S, Millikin RJ, Dai Y, Tiberi S, Castaldi PJ, Shortreed MR, Luckey CJ, Conesa A, Smith LM, Deslattes Mays A, Sheynkman GM.
Miller RM, et al.
Genome Biol. 2022 Mar 3;23(1):69. doi: 10.1186/s13059-022-02624-y.
Genome Biol. 2022.
PMID: 35241129
Free PMC article.
Item in Clipboard
A roadmap for the functional annotation of protein families: a community perspective.
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J.
de Crécy-Lagard V, et al.
Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062.
Database (Oxford). 2022.
PMID: 35961013
Free PMC article.
Item in Clipboard
IS-PRM-based peptide targeting informed by long-read sequencing for alternative proteome detection.
Korchak JA, Jeffery ED, Bandyopadhyay S, Jordan BT, Lehe M, Watts EF, Fenix A, Wilhelm M, Sheynkman GM.
Korchak JA, et al.
bioRxiv [Preprint]. 2024 Apr 1:2024.04.01.587549. doi: 10.1101/2024.04.01.587549.
bioRxiv. 2024.
PMID: 38617311
Free PMC article.
Preprint.
Item in Clipboard
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms.
Lambourne L, Mattioli K, Santoso C, Sheynkman G, Inukai S, Kaundal B, Berenson A, Spirohn-Fitzgerald K, Bhattacharjee A, Rothman E, Shrestha S, Laval F, Yang Z, Bisht D, Sewell JA, Li G, Prasad A, Phanor S, Lane R, Campbell DM, Hunt T, Balcha D, Gebbia M, Twizere JC, Hao T, Frankish A, Riback JA, Salomonis N, Calderwood MA, Hill DE, Sahni N, Vidal M, Bulyk ML, Fuxman Bass JI.
Lambourne L, et al.
bioRxiv [Preprint]. 2024 Apr 10:2024.03.12.584681. doi: 10.1101/2024.03.12.584681.
bioRxiv. 2024.
PMID: 38617209
Free PMC article.
Preprint.
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