TGM06Z06/TI_/Telethon/Italy[Grants and Funding] - Search Results

Year	Number of Results
2006	4
2007	2
2008	2
2009	1
2010	1
2024	0

1

Computational framework for the prediction of transcription factor binding sites by multiple data integration.

Ambesi-Impiombato A, Bansal M, Liò P, di Bernardo D. Ambesi-Impiombato A, et al. BMC Neurosci. 2006 Oct 30;7 Suppl 1(Suppl 1):S8. doi: 10.1186/1471-2202-7-S1-S8. BMC Neurosci. 2006. PMID: 17118162 Free PMC article. Review.

2

Transcriptional network dynamics in macrophage activation.

Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Björkegren J, Katayama S, Reid JF, Sweet MJ, Gariboldi M, Carninci P, Hayashizaki Y, Hume DA, Tegner J, Ravasi T. Nilsson R, et al. Genomics. 2006 Aug;88(2):133-42. doi: 10.1016/j.ygeno.2006.03.022. Epub 2006 May 12. Genomics. 2006. PMID: 16698233 Free article.

3

How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch.

Marucci L, Barton DA, Cantone I, Ricci MA, Cosma MP, Santini S, di Bernardo D, di Bernardo M. Marucci L, et al. PLoS One. 2009 Dec 7;4(12):e8083. doi: 10.1371/journal.pone.0008083. PLoS One. 2009. PMID: 19997611 Free PMC article.

4

BATS: a Bayesian user-friendly software for analyzing time series microarray experiments.

Angelini C, Cutillo L, De Canditiis D, Mutarelli M, Pensky M. Angelini C, et al. BMC Bioinformatics. 2008 Oct 6;9:415. doi: 10.1186/1471-2105-9-415. BMC Bioinformatics. 2008. PMID: 18837969 Free PMC article.

5

Inference of gene regulatory networks and compound mode of action from time course gene expression profiles.

Bansal M, Della Gatta G, di Bernardo D. Bansal M, et al. Bioinformatics. 2006 Apr 1;22(7):815-22. doi: 10.1093/bioinformatics/btl003. Epub 2006 Jan 17. Bioinformatics. 2006. PMID: 16418235 Free article.

6

Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering.

Della Gatta G, Bansal M, Ambesi-Impiombato A, Antonini D, Missero C, di Bernardo D. Della Gatta G, et al. Genome Res. 2008 Jun;18(6):939-48. doi: 10.1101/gr.073601.107. Epub 2008 Apr 25. Genome Res. 2008. PMID: 18441228 Free PMC article.

7

How to infer gene networks from expression profiles.

Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D. Bansal M, et al. Mol Syst Biol. 2007;3:78. doi: 10.1038/msb4100120. Epub 2007 Feb 13. Mol Syst Biol. 2007. PMID: 17299415 Free PMC article.

8

Inference of gene networks from temporal gene expression profiles.

Bansal M, di Bernardo D. Bansal M, et al. IET Syst Biol. 2007 Sep;1(5):306-12. doi: 10.1049/iet-syb:20060079. IET Syst Biol. 2007. PMID: 17907680 Free article.

9

Identification of small molecules enhancing autophagic function from drug network analysis.

Iorio F, Isacchi A, di Bernardo D, Brunetti-Pierri N. Iorio F, et al. Autophagy. 2010 Nov;6(8):1204-5. doi: 10.1073/pnas.1000138107. Epub 2010 Nov 16. Autophagy. 2010. PMID: 20930556

10

A multi-step approach to time series analysis and gene expression clustering.

Amato R, Ciaramella A, Deniskina N, Del Mondo C, di Bernardo D, Donalek C, Longo G, Mangano G, Miele G, Raiconi G, Staiano A, Tagliaferri R. Amato R, et al. Bioinformatics. 2006 Mar 1;22(5):589-96. doi: 10.1093/bioinformatics/btk026. Epub 2006 Jan 5. Bioinformatics. 2006. PMID: 16397005

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