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2018 1
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GlyGen data model and processing workflow.
Kahsay R, Vora J, Navelkar R, Mousavi R, Fochtman BC, Holmes X, Pattabiraman N, Ranzinger R, Mahadik R, Williamson T, Kulkarni S, Agarwal G, Martin M, Vasudev P, Garcia L, Edwards N, Zhang W, Natale DA, Ross K, Aoki-Kinoshita KF, Campbell MP, York WS, Mazumder R. Kahsay R, et al. Bioinformatics. 2020 Jun 1;36(12):3941-3943. doi: 10.1093/bioinformatics/btaa238. Bioinformatics. 2020. PMID: 32324859 Free PMC article.
Tools for generating and analyzing glycan microarray data.
Mehta AY, Heimburg-Molinaro J, Cummings RD. Mehta AY, et al. Beilstein J Org Chem. 2020 Sep 10;16:2260-2271. doi: 10.3762/bjoc.16.187. eCollection 2020. Beilstein J Org Chem. 2020. PMID: 32983270 Free PMC article. Review.
The international glycan repository GlyTouCan version 3.0.
Fujita A, Aoki NP, Shinmachi D, Matsubara M, Tsuchiya S, Shiota M, Ono T, Yamada I, Aoki-Kinoshita KF. Fujita A, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D1529-D1533. doi: 10.1093/nar/gkaa947. Nucleic Acids Res. 2021. PMID: 33125071 Free PMC article.
Bioinformatics tools developed to support BioCompute Objects.
Patel JA, Dean DA, King CH, Xiao N, Koc S, Minina E, Golikov A, Brooks P, Kahsay R, Navelkar R, Ray M, Roberson D, Armstrong C, Mazumder R, Keeney J. Patel JA, et al. Database (Oxford). 2021 Mar 30;2021:baab008. doi: 10.1093/database/baab008. Database (Oxford). 2021. PMID: 33784373 Free PMC article.
Global mapping of glycosylation pathways in human-derived cells.
Huang YF, Aoki K, Akase S, Ishihara M, Liu YS, Yang G, Kizuka Y, Mizumoto S, Tiemeyer M, Gao XD, Aoki-Kinoshita KF, Fujita M. Huang YF, et al. Dev Cell. 2021 Apr 19;56(8):1195-1209.e7. doi: 10.1016/j.devcel.2021.02.023. Epub 2021 Mar 16. Dev Cell. 2021. PMID: 33730547 Free PMC article.
GlyMDB: Glycan Microarray Database and analysis toolset.
Cao Y, Park SJ, Mehta AY, Cummings RD, Im W. Cao Y, et al. Bioinformatics. 2020 Apr 15;36(8):2438-2442. doi: 10.1093/bioinformatics/btz934. Bioinformatics. 2020. PMID: 31841142 Free PMC article.
GlyGen: Computational and Informatics Resources for Glycoscience.
York WS, Mazumder R, Ranzinger R, Edwards N, Kahsay R, Aoki-Kinoshita KF, Campbell MP, Cummings RD, Feizi T, Martin M, Natale DA, Packer NH, Woods RJ, Agarwal G, Arpinar S, Bhat S, Blake J, Castro LJG, Fochtman B, Gildersleeve J, Goldman R, Holmes X, Jain V, Kulkarni S, Mahadik R, Mehta A, Mousavi R, Nakarakommula S, Navelkar R, Pattabiraman N, Pierce MJ, Ross K, Vasudev P, Vora J, Williamson T, Zhang W. York WS, et al. Glycobiology. 2020 Jan 28;30(2):72-73. doi: 10.1093/glycob/cwz080. Glycobiology. 2020. PMID: 31616925 Free PMC article. No abstract available.
21 results