Aitken S - Search Results

1

A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation.

Aitken S, Alexander RD, Beggs JD. Aitken S, et al. J R Soc Interface. 2013 Jun 26;10(86):20130438. doi: 10.1098/rsif.2013.0438. Print 2013 Sep 6. J R Soc Interface. 2013. PMID: 23804443 Free PMC article.

2

Processivity and coupling in messenger RNA transcription.

Aitken S, Robert MC, Alexander RD, Goryanin I, Bertrand E, Beggs JD. Aitken S, et al. PLoS One. 2010 Jan 28;5(1):e8845. doi: 10.1371/journal.pone.0008845. PLoS One. 2010. PMID: 20126621 Free PMC article.

3

Modelling reveals kinetic advantages of co-transcriptional splicing.

Aitken S, Alexander RD, Beggs JD. Aitken S, et al. PLoS Comput Biol. 2011 Oct;7(10):e1002215. doi: 10.1371/journal.pcbi.1002215. Epub 2011 Oct 13. PLoS Comput Biol. 2011. PMID: 22022255 Free PMC article.

4

The circadian dynamics of small nucleolar RNA in the mouse liver.

Aitken S, Semple CA. Aitken S, et al. J R Soc Interface. 2017 May;14(130):20170034. doi: 10.1098/rsif.2017.0034. J R Soc Interface. 2017. PMID: 28468917 Free PMC article.

5

A slow transcription rate causes embryonic lethality and perturbs kinetic coupling of neuronal genes.

Maslon MM, Braunschweig U, Aitken S, Mann AR, Kilanowski F, Hunter CJ, Blencowe BJ, Kornblihtt AR, Adams IR, Cáceres JF. Maslon MM, et al. Among authors: aitken s. EMBO J. 2019 May 2;38(9):e101244. doi: 10.15252/embj.2018101244. Epub 2019 Apr 15. EMBO J. 2019. PMID: 30988016 Free PMC article.

6

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium; Semple CA, Dostie J, Pombo A, Nicodemi M. Fraser J, et al. Among authors: aitken s. Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492. Mol Syst Biol. 2015. PMID: 26700852 Free PMC article.

7

Bioinformatic Analysis of Next-Generation Sequencing Data to Identify WT1-Associated Differential Gene and Isoform Expression.

Aitken S, Bharathavikru R. Aitken S, et al. Methods Mol Biol. 2016;1467:211-9. doi: 10.1007/978-1-4939-4023-3_18. Methods Mol Biol. 2016. PMID: 27417972

8

Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation.

Schmidt U, Basyuk E, Robert MC, Yoshida M, Villemin JP, Auboeuf D, Aitken S, Bertrand E. Schmidt U, et al. Among authors: aitken s. J Cell Biol. 2011 May 30;193(5):819-29. doi: 10.1083/jcb.201009012. J Cell Biol. 2011. PMID: 21624952 Free PMC article.

9

EnzML: multi-label prediction of enzyme classes using InterPro signatures.

De Ferrari L, Aitken S, van Hemert J, Goryanin I. De Ferrari L, et al. Among authors: aitken s. BMC Bioinformatics. 2012 Apr 25;13:61. doi: 10.1186/1471-2105-13-61. BMC Bioinformatics. 2012. PMID: 22533924 Free PMC article.

10

Integrative modeling reveals the principles of multi-scale chromatin boundary formation in human nuclear organization.

Moore BL, Aitken S, Semple CA. Moore BL, et al. Among authors: aitken s. Genome Biol. 2015 May 27;16(1):110. doi: 10.1186/s13059-015-0661-x. Genome Biol. 2015. PMID: 26013771 Free PMC article.

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