Anders S - Search Results

1

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Love MI, Huber W, Anders S. Love MI, et al. Among authors: anders s. Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8. Genome Biol. 2014. PMID: 25516281 Free PMC article.

2

Genome-wide analysis of mRNA decay patterns during early Drosophila development.

Thomsen S, Anders S, Janga SC, Huber W, Alonso CR. Thomsen S, et al. Among authors: anders s. Genome Biol. 2010;11(9):R93. doi: 10.1186/gb-2010-11-9-r93. Epub 2010 Sep 21. Genome Biol. 2010. PMID: 20858238 Free PMC article.

3

Differential expression analysis for sequence count data.

Anders S, Huber W. Anders S, et al. Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27. Genome Biol. 2010. PMID: 20979621 Free PMC article.

4

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions.

Schlattl A, Anders S, Waszak SM, Huber W, Korbel JO. Schlattl A, et al. Among authors: anders s. Genome Res. 2011 Dec;21(12):2004-13. doi: 10.1101/gr.122614.111. Epub 2011 Aug 23. Genome Res. 2011. PMID: 21862627 Free PMC article.

5

Detecting differential usage of exons from RNA-seq data.

Anders S, Reyes A, Huber W. Anders S, et al. Genome Res. 2012 Oct;22(10):2008-17. doi: 10.1101/gr.133744.111. Epub 2012 Jun 21. Genome Res. 2012. PMID: 22722343 Free PMC article.

6

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.

Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD. Anders S, et al. Nat Protoc. 2013 Sep;8(9):1765-86. doi: 10.1038/nprot.2013.099. Epub 2013 Aug 22. Nat Protoc. 2013. PMID: 23975260

7

Drift and conservation of differential exon usage across tissues in primate species.

Reyes A, Anders S, Weatheritt RJ, Gibson TJ, Steinmetz LM, Huber W. Reyes A, et al. Among authors: anders s. Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15377-82. doi: 10.1073/pnas.1307202110. Epub 2013 Sep 3. Proc Natl Acad Sci U S A. 2013. PMID: 24003148 Free PMC article.

8

HTSeq--a Python framework to work with high-throughput sequencing data.

Anders S, Pyl PT, Huber W. Anders S, et al. Bioinformatics. 2015 Jan 15;31(2):166-9. doi: 10.1093/bioinformatics/btu638. Epub 2014 Sep 25. Bioinformatics. 2015. PMID: 25260700 Free PMC article.

9

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: anders s. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.

10

FourCSeq: analysis of 4C sequencing data.

Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. Klein FA, et al. Among authors: anders s. Bioinformatics. 2015 Oct 1;31(19):3085-91. doi: 10.1093/bioinformatics/btv335. Epub 2015 Jun 1. Bioinformatics. 2015. PMID: 26034064 Free PMC article.

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