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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: arkin ap. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
A latent variable model for chemogenomic profiling.
Flaherty P, Giaever G, Kumm J, Jordan MI, Arkin AP. Flaherty P, et al. Among authors: arkin ap. Bioinformatics. 2005 Aug 1;21(15):3286-93. doi: 10.1093/bioinformatics/bti515. Epub 2005 May 26. Bioinformatics. 2005. PMID: 15919724
WIST: toolkit for rapid, customized LIMS development.
Huang YW, Arkin AP, Chandonia JM. Huang YW, et al. Among authors: arkin ap. Bioinformatics. 2011 Feb 1;27(3):437-8. doi: 10.1093/bioinformatics/btq676. Epub 2011 Jan 21. Bioinformatics. 2011. PMID: 21258060 Free PMC article.
D-Tailor: automated analysis and design of DNA sequences.
Guimaraes JC, Rocha M, Arkin AP, Cambray G. Guimaraes JC, et al. Among authors: arkin ap. Bioinformatics. 2014 Apr 15;30(8):1087-1094. doi: 10.1093/bioinformatics/btt742. Epub 2014 Jan 6. Bioinformatics. 2014. PMID: 24398007 Free PMC article.
Systems biology: a switch for sex.
Andrews SS, Arkin AP. Andrews SS, et al. Among authors: arkin ap. Curr Biol. 2007 Jun 5;17(11):R410-2. doi: 10.1016/j.cub.2007.03.060. Curr Biol. 2007. PMID: 17550765 Free article.
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D. Arkin AP, et al. Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. Nat Biotechnol. 2018. PMID: 29979655 Free PMC article. No abstract available.
Synthetic cell biology.
Arkin AP. Arkin AP. Curr Opin Biotechnol. 2001 Dec;12(6):638-44. doi: 10.1016/s0958-1669(01)00273-7. Curr Opin Biotechnol. 2001. PMID: 11849948 Review.
360 results