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A Bayesian method for analyzing lateral gene transfer.
Sjöstrand J, Tofigh A, Daubin V, Arvestad L, Sennblad B, Lagergren J. Sjöstrand J, et al. Among authors: arvestad l. Syst Biol. 2014 May;63(3):409-20. doi: 10.1093/sysbio/syu007. Epub 2014 Feb 20. Syst Biol. 2014. PMID: 24562812
GenPhyloData: realistic simulation of gene family evolution.
Sjöstrand J, Arvestad L, Lagergren J, Sennblad B. Sjöstrand J, et al. Among authors: arvestad l. BMC Bioinformatics. 2013 Jun 27;14:209. doi: 10.1186/1471-2105-14-209. BMC Bioinformatics. 2013. PMID: 23803001 Free PMC article.
Probabilistic inference of lateral gene transfer events.
Khan MA, Mahmudi O, Ullah I, Arvestad L, Lagergren J. Khan MA, et al. Among authors: arvestad l. BMC Bioinformatics. 2016 Nov 11;17(Suppl 14):431. doi: 10.1186/s12859-016-1268-2. BMC Bioinformatics. 2016. PMID: 28185583 Free PMC article.
DLRS: gene tree evolution in light of a species tree.
Sjöstrand J, Sennblad B, Arvestad L, Lagergren J. Sjöstrand J, et al. Among authors: arvestad l. Bioinformatics. 2012 Nov 15;28(22):2994-5. doi: 10.1093/bioinformatics/bts548. Epub 2012 Sep 14. Bioinformatics. 2012. PMID: 22982573
Genome-wide survey for biologically functional pseudogenes.
Svensson O, Arvestad L, Lagergren J. Svensson O, et al. Among authors: arvestad l. PLoS Comput Biol. 2006 May;2(5):e46. doi: 10.1371/journal.pcbi.0020046. Epub 2006 May 5. PLoS Comput Biol. 2006. PMID: 16680195 Free PMC article.
primetv: a viewer for reconciled trees.
Sennblad B, Schreil E, Berglund Sonnhammer AC, Lagergren J, Arvestad L. Sennblad B, et al. Among authors: arvestad l. BMC Bioinformatics. 2007 May 7;8:148. doi: 10.1186/1471-2105-8-148. BMC Bioinformatics. 2007. PMID: 17484781 Free PMC article.
Gene-pseudogene evolution: a probabilistic approach.
Mahmudi O, Sennblad B, Arvestad L, Nowick K, Lagergren J. Mahmudi O, et al. Among authors: arvestad l. BMC Genomics. 2015;16 Suppl 10(Suppl 10):S12. doi: 10.1186/1471-2164-16-S10-S12. Epub 2015 Oct 2. BMC Genomics. 2015. PMID: 26449131 Free PMC article.
RecPhyloXML: a format for reconciled gene trees.
Duchemin W, Gence G, Arigon Chifolleau AM, Arvestad L, Bansal MS, Berry V, Boussau B, Chevenet F, Comte N, Davín AA, Dessimoz C, Dylus D, Hasic D, Mallo D, Planel R, Posada D, Scornavacca C, Szöllosi G, Zhang L, Tannier É, Daubin V. Duchemin W, et al. Among authors: arvestad l. Bioinformatics. 2018 Nov 1;34(21):3646-3652. doi: 10.1093/bioinformatics/bty389. Bioinformatics. 2018. PMID: 29762653 Free PMC article.
38 results