Astola J - Search Results

1

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues.

Kilpinen S, Autio R, Ojala K, Iljin K, Bucher E, Sara H, Pisto T, Saarela M, Skotheim RI, Björkman M, Mpindi JP, Haapa-Paananen S, Vainio P, Edgren H, Wolf M, Astola J, Nees M, Hautaniemi S, Kallioniemi O. Kilpinen S, et al. Among authors: astola j. Genome Biol. 2008;9(9):R139. doi: 10.1186/gb-2008-9-9-r139. Epub 2008 Sep 19. Genome Biol. 2008. PMID: 18803840 Free PMC article.

2

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.

Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, Astola J. Autio R, et al. Among authors: astola j. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S24. doi: 10.1186/1471-2105-10-S1-S24. BMC Bioinformatics. 2009. PMID: 19208124 Free PMC article.

3

Advanced analysis and visualization of gene copy number and expression data.

Autio R, Saarela M, Järvinen AK, Hautaniemi S, Astola J. Autio R, et al. Among authors: astola j. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S70. doi: 10.1186/1471-2105-10-S1-S70. BMC Bioinformatics. 2009. PMID: 19208175 Free PMC article.

4

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O. Hautaniemi S, et al. Among authors: astola j. Bioinformatics. 2003 Nov 1;19(16):2031-8. doi: 10.1093/bioinformatics/btg275. Bioinformatics. 2003. PMID: 14594707

5

Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines.

Kauraniemi P, Hautaniemi S, Autio R, Astola J, Monni O, Elkahloun A, Kallioniemi A. Kauraniemi P, et al. Among authors: astola j. Oncogene. 2004 Jan 29;23(4):1010-3. doi: 10.1038/sj.onc.1207200. Oncogene. 2004. PMID: 14647448

6

CGH-Plotter: MATLAB toolbox for CGH-data analysis.

Autio R, Hautaniemi S, Kauraniemi P, Yli-Harja O, Astola J, Wolf M, Kallioniemi A. Autio R, et al. Among authors: astola j. Bioinformatics. 2003 Sep 1;19(13):1714-5. doi: 10.1093/bioinformatics/btg230. Bioinformatics. 2003. PMID: 15593402

7

Jointly analyzing gene expression and copy number data in breast cancer using data reduction models.

Berger JA, Hautaniemi S, Mitra SK, Astola J. Berger JA, et al. Among authors: astola j. IEEE/ACM Trans Comput Biol Bioinform. 2006 Jan-Mar;3(1):2-16. doi: 10.1109/TCBB.2006.10. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048389

8

Optimized LOWESS normalization parameter selection for DNA microarray data.

Berger JA, Hautaniemi S, Järvinen AK, Edgren H, Mitra SK, Astola J. Berger JA, et al. Among authors: astola j. BMC Bioinformatics. 2004 Dec 9;5:194. doi: 10.1186/1471-2105-5-194. BMC Bioinformatics. 2004. PMID: 15588297 Free PMC article.

9

Gene-expression profiling predicts recurrence in Dukes' C colorectal cancer.

Arango D, Laiho P, Kokko A, Alhopuro P, Sammalkorpi H, Salovaara R, Nicorici D, Hautaniemi S, Alazzouzi H, Mecklin JP, Järvinen H, Hemminki A, Astola J, Schwartz S Jr, Aaltonen LA. Arango D, et al. Among authors: astola j. Gastroenterology. 2005 Sep;129(3):874-84. doi: 10.1053/j.gastro.2005.06.066. Gastroenterology. 2005. PMID: 16143127

10

Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.

Nicorici D, Yli-Harja O, Astola J. Nicorici D, et al. Among authors: astola j. IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):82-9. doi: 10.1109/memb.2006.1578667. IEEE Eng Med Biol Mag. 2006. PMID: 16485395 No abstract available.

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