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Cytoscape.js: a graph theory library for visualisation and analysis.
Franz M, Lopes CT, Huck G, Dong Y, Sumer O, Bader GD. Franz M, et al. Among authors: bader gd. Bioinformatics. 2016 Jan 15;32(2):309-11. doi: 10.1093/bioinformatics/btv557. Epub 2015 Sep 28. Bioinformatics. 2016. PMID: 26415722 Free PMC article.
NetMatch: a Cytoscape plugin for searching biological networks.
Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD, Shasha D. Ferro A, et al. Among authors: bader gd. Bioinformatics. 2007 Apr 1;23(7):910-2. doi: 10.1093/bioinformatics/btm032. Epub 2007 Feb 3. Bioinformatics. 2007. PMID: 17277332
Cytoscape ESP: simple search of complex biological networks.
Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M, States DJ. Ashkenazi M, et al. Among authors: bader gd. Bioinformatics. 2008 Jun 15;24(12):1465-6. doi: 10.1093/bioinformatics/btn208. Epub 2008 Apr 28. Bioinformatics. 2008. PMID: 18445605 Free PMC article.
Exploring biological networks with Cytoscape software.
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Yeung N, et al. Among authors: bader gd. Curr Protoc Bioinformatics. 2008 Sep;Chapter 8:8.13.1-8.13.20. doi: 10.1002/0471250953.bi0813s23. Curr Protoc Bioinformatics. 2008. PMID: 18819078
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q. Warde-Farley D, et al. Among authors: bader gd. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537. Nucleic Acids Res. 2010. PMID: 20576703 Free PMC article.
Cytoscape Web: an interactive web-based network browser.
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Lopes CT, et al. Among authors: bader gd. Bioinformatics. 2010 Sep 15;26(18):2347-8. doi: 10.1093/bioinformatics/btq430. Epub 2010 Jul 23. Bioinformatics. 2010. PMID: 20656902 Free PMC article.
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.
Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD. Montojo J, et al. Among authors: bader gd. Bioinformatics. 2010 Nov 15;26(22):2927-8. doi: 10.1093/bioinformatics/btq562. Epub 2010 Oct 5. Bioinformatics. 2010. PMID: 20926419 Free PMC article.
Cytoscape app store.
Lotia S, Montojo J, Dong Y, Bader GD, Pico AR. Lotia S, et al. Among authors: bader gd. Bioinformatics. 2013 May 15;29(10):1350-1. doi: 10.1093/bioinformatics/btt138. Epub 2013 Apr 16. Bioinformatics. 2013. PMID: 23595664 Free PMC article.
GeneMANIA prediction server 2013 update.
Zuberi K, Franz M, Rodriguez H, Montojo J, Lopes CT, Bader GD, Morris Q. Zuberi K, et al. Among authors: bader gd. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W115-22. doi: 10.1093/nar/gkt533. Nucleic Acids Res. 2013. PMID: 23794635 Free PMC article.
345 results