Bainbridge MN - Search Results

1

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ. Bainbridge MN, et al. BMC Genomics. 2006 Sep 29;7:246. doi: 10.1186/1471-2164-7-246. BMC Genomics. 2006. PMID: 17010196 Free PMC article.

2

THOR: targeted high-throughput ortholog reconstructor.

Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. Bainbridge MN, et al. Bioinformatics. 2007 Oct 1;23(19):2622-4. doi: 10.1093/bioinformatics/btl513. Epub 2006 Oct 11. Bioinformatics. 2007. PMID: 17038343

3

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.

Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S. Robertson G, et al. Nat Methods. 2007 Aug;4(8):651-7. doi: 10.1038/nmeth1068. Epub 2007 Jun 11. Nat Methods. 2007. PMID: 17558387

4

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology.

Fejes AP, Robertson G, Bilenky M, Varhol R, Bainbridge M, Jones SJ. Fejes AP, et al. Bioinformatics. 2008 Aug 1;24(15):1729-30. doi: 10.1093/bioinformatics/btn305. Epub 2008 Jul 3. Bioinformatics. 2008. PMID: 18599518 Free PMC article.

5

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.

Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra M. Morin R, et al. Biotechniques. 2008 Jul;45(1):81-94. doi: 10.2144/000112900. Biotechniques. 2008. PMID: 18611170 Free article.

6

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ. Shin H, et al. Among authors: bainbridge mn. BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30. BMC Biol. 2008. PMID: 18611272 Free PMC article.

7

Comprehensive molecular characterization of human colon and rectal cancer.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. Nature. 2012. PMID: 22810696 Free PMC article.

8

Demographic history and rare allele sharing among human populations.

Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA; 1000 Genomes Project; Bustamante CD. Gravel S, et al. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11983-8. doi: 10.1073/pnas.1019276108. Epub 2011 Jul 5. Proc Natl Acad Sci U S A. 2011. PMID: 21730125 Free PMC article.

9

Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes.

Lotta LA, Wang M, Yu J, Martinelli I, Yu F, Passamonti SM, Consonni D, Pappalardo E, Menegatti M, Scherer SE, Lewis LL, Akbar H, Wu Y, Bainbridge MN, Muzny DM, Mannucci PM, Gibbs RA, Peyvandi F. Lotta LA, et al. Among authors: bainbridge mn. BMC Med Genomics. 2012 Feb 21;5:7. doi: 10.1186/1755-8794-5-7. BMC Med Genomics. 2012. PMID: 22353194 Free PMC article.

10

The 1000 Genomes Project: data management and community access.

Clarke L, Zheng-Bradley X, Smith R, Kulesha E, Xiao C, Toneva I, Vaughan B, Preuss D, Leinonen R, Shumway M, Sherry S, Flicek P; 1000 Genomes Project Consortium. Clarke L, et al. Nat Methods. 2012 Apr 27;9(5):459-62. doi: 10.1038/nmeth.1974. Nat Methods. 2012. PMID: 22543379 Free PMC article.

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