Berens ME - Search Results

1

Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling.

Creamer MS, Stites EC, Aziz M, Cahill JA, Tan CW, Berens ME, Han H, Bussey KJ, Von Hoff DD, Hlavacek WS, Posner RG. Creamer MS, et al. Among authors: berens me. BMC Syst Biol. 2012 Aug 22;6:107. doi: 10.1186/1752-0509-6-107. BMC Syst Biol. 2012. PMID: 22913808 Free PMC article.

2

Learning contextual gene set interaction networks of cancer with condition specificity.

Jung S, Verdicchio M, Kiefer J, Von Hoff D, Berens M, Bittner M, Kim S. Jung S, et al. BMC Genomics. 2013 Feb 19;14:110. doi: 10.1186/1471-2164-14-110. BMC Genomics. 2013. PMID: 23418942 Free PMC article.

3

Glioma cells on the run - the migratory transcriptome of 10 human glioma cell lines.

Demuth T, Rennert JL, Hoelzinger DB, Reavie LB, Nakada M, Beaudry C, Nakada S, Anderson EM, Henrichs AN, McDonough WS, Holz D, Joy A, Lin R, Pan KH, Lih CJ, Cohen SN, Berens ME. Demuth T, et al. Among authors: berens me. BMC Genomics. 2008 Jan 29;9:54. doi: 10.1186/1471-2164-9-54. BMC Genomics. 2008. PMID: 18230158 Free PMC article.

4

KNOWLEDGE-ASSISTED APPROACH TO IDENTIFY PATHWAYS WITH DIFFERENTIAL DEPENDENCIES.

Speyer G, Kiefer J, Dhruv H, Berens M, Kim S. Speyer G, et al. Pac Symp Biocomput. 2016;21:33-44. Pac Symp Biocomput. 2016. PMID: 26776171 Free PMC article.

5

DIFFERENTIAL PATHWAY DEPENDENCY DISCOVERY ASSOCIATED WITH DRUG RESPONSE ACROSS CANCER CELL LINES.

Speyer G, Mahendra D, Tran HJ, Kiefer J, Schreiber SL, Clemons PA, Dhruv H, Berens M, Kim S. Speyer G, et al. Pac Symp Biocomput. 2017;22:497-508. doi: 10.1142/9789813207813_0046. Pac Symp Biocomput. 2017. PMID: 27897001 Free PMC article.

6

A knowledge based approach for representing and reasoning about signaling networks.

Baral C, Chancellor K, Tran N, Tran NL, Joy A, Berens M. Baral C, et al. Bioinformatics. 2004 Aug 4;20 Suppl 1:i15-22. doi: 10.1093/bioinformatics/bth918. Bioinformatics. 2004. PMID: 15262776

7

EphB2/R-Ras signaling regulates glioma cell adhesion, growth, and invasion.

Nakada M, Niska JA, Tran NL, McDonough WS, Berens ME. Nakada M, et al. Among authors: berens me. Am J Pathol. 2005 Aug;167(2):565-76. doi: 10.1016/S0002-9440(10)62998-7. Am J Pathol. 2005. PMID: 16049340 Free PMC article.

8

Targeting aPKC disables oncogenic signaling by both the EGFR and the proinflammatory cytokine TNFα in glioblastoma.

Kusne Y, Carrera-Silva EA, Perry AS, Rushing EJ, Mandell EK, Dietrich JD, Errasti AE, Gibbs D, Berens ME, Loftus JC, Hulme C, Yang W, Lu Z, Aldape K, Sanai N, Rothlin CV, Ghosh S. Kusne Y, et al. Among authors: berens me. Sci Signal. 2014 Aug 12;7(338):ra75. doi: 10.1126/scisignal.2005196. Sci Signal. 2014. PMID: 25118327 Free PMC article.

9

Migrating glioma cells activate the PI3-K pathway and display decreased susceptibility to apoptosis.

Joy AM, Beaudry CE, Tran NL, Ponce FA, Holz DR, Demuth T, Berens ME. Joy AM, et al. Among authors: berens me. J Cell Sci. 2003 Nov 1;116(Pt 21):4409-17. doi: 10.1242/jcs.00712. Epub 2003 Sep 16. J Cell Sci. 2003. PMID: 13130092

10

The tumor necrosis factor-like weak inducer of apoptosis (TWEAK)-fibroblast growth factor-inducible 14 (Fn14) signaling system regulates glioma cell survival via NFkappaB pathway activation and BCL-XL/BCL-W expression.

Tran NL, McDonough WS, Savitch BA, Sawyer TF, Winkles JA, Berens ME. Tran NL, et al. Among authors: berens me. J Biol Chem. 2005 Feb 4;280(5):3483-92. doi: 10.1074/jbc.M409906200. Epub 2004 Dec 16. J Biol Chem. 2005. PMID: 15611130 Free article.

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