Bonnet E - Search Results

1

Generic eukaryotic core promoter prediction using structural features of DNA.

Abeel T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y. Abeel T, et al. Among authors: bonnet e. Genome Res. 2008 Feb;18(2):310-23. doi: 10.1101/gr.6991408. Epub 2007 Dec 20. Genome Res. 2008. PMID: 18096745 Free PMC article.

2

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y. Bonnet E, et al. Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6. doi: 10.1073/pnas.0404025101. Epub 2004 Jul 22. Proc Natl Acad Sci U S A. 2004. PMID: 15272084 Free PMC article.

3

The small RNA world of plants.

Bonnet E, Van de Peer Y, Rouzé P. Bonnet E, et al. New Phytol. 2006;171(3):451-68. doi: 10.1111/j.1469-8137.2006.01806.x. New Phytol. 2006. PMID: 16866953 Free article. Review.

4

Validating module network learning algorithms using simulated data.

Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: bonnet e. BMC Bioinformatics. 2007 May 3;8 Suppl 2(Suppl 2):S5. doi: 10.1186/1471-2105-8-S2-S5. BMC Bioinformatics. 2007. PMID: 17493254 Free PMC article.

5

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.

Bonnet E, Michoel T, Van de Peer Y. Bonnet E, et al. Bioinformatics. 2010 Sep 15;26(18):i638-44. doi: 10.1093/bioinformatics/btq395. Bioinformatics. 2010. PMID: 20823333 Free PMC article.

6

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y. Bonnet E, et al. Bioinformatics. 2004 Nov 22;20(17):2911-7. doi: 10.1093/bioinformatics/bth374. Epub 2004 Jun 24. Bioinformatics. 2004. PMID: 15217813

7

Module network inference from a cancer gene expression data set identifies microRNA regulated modules.

Bonnet E, Tatari M, Joshi A, Michoel T, Marchal K, Berx G, Van de Peer Y. Bonnet E, et al. PLoS One. 2010 Apr 14;5(4):e10162. doi: 10.1371/journal.pone.0010162. PLoS One. 2010. PMID: 20418949 Free PMC article.

8

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

Bonnet E, He Y, Billiau K, Van de Peer Y. Bonnet E, et al. Bioinformatics. 2010 Jun 15;26(12):1566-8. doi: 10.1093/bioinformatics/btq233. Epub 2010 Apr 28. Bioinformatics. 2010. PMID: 20430753

9

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y. Vermeirssen V, et al. Among authors: bonnet e. Mol Biosyst. 2009 Dec;5(12):1817-30. doi: 10.1039/B908108a. Epub 2009 Jul 17. Mol Biosyst. 2009. PMID: 19763340

10

The genome of Tetranychus urticae reveals herbivorous pest adaptations.

Grbić M, Van Leeuwen T, Clark RM, Rombauts S, Rouzé P, Grbić V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernández-Crespo P, Diaz I, Martinez M, Navajas M, Sucena É, Magalhães S, Nagy L, Pace RM, Djuranović S, Smagghe G, Iga M, Christiaens O, Veenstra JA, Ewer J, Villalobos RM, Hutter JL, Hudson SD, Velez M, Yi SV, Zeng J, Pires-daSilva A, Roch F, Cazaux M, Navarro M, Zhurov V, Acevedo G, Bjelica A, Fawcett JA, Bonnet E, Martens C, Baele G, Wissler L, Sanchez-Rodriguez A, Tirry L, Blais C, Demeestere K, Henz SR, Gregory TR, Mathieu J, Verdon L, Farinelli L, Schmutz J, Lindquist E, Feyereisen R, Van de Peer Y. Grbić M, et al. Among authors: bonnet e. Nature. 2011 Nov 23;479(7374):487-92. doi: 10.1038/nature10640. Nature. 2011. PMID: 22113690 Free PMC article.

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