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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. Haas BJ, et al. Among authors: bowden j. Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11. Nat Protoc. 2013. PMID: 23845962 Free PMC article.
Eagle for better genome-wide association mapping.
George AW, Verbyla A, Bowden J. George AW, et al. Among authors: bowden j. G3 (Bethesda). 2021 Sep 6;11(9):jkab204. doi: 10.1093/g3journal/jkab204. G3 (Bethesda). 2021. PMID: 34544142 Free PMC article.
Lipidomics and plasma hormone analysis differentiate reproductive and pregnancy statuses in Florida manatees (Trichechus manatus latirostris).
Brammer-Robbins E, Nouri MZ, Griffin EK, Aristizabal-Henao JJ, Denslow ND, Bowden JA, Larkin IV, Martyniuk CJ. Brammer-Robbins E, et al. Among authors: bowden ja. Comp Biochem Physiol Part D Genomics Proteomics. 2024 Apr 3;50:101231. doi: 10.1016/j.cbd.2024.101231. Online ahead of print. Comp Biochem Physiol Part D Genomics Proteomics. 2024. PMID: 38643744
585 results