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Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Phylogenetics links monster larva to deep-sea shrimp.
Bracken-Grissom HD, Felder DL, Vollmer NL, Martin JW, Crandall KA. Bracken-Grissom HD, et al. Ecol Evol. 2012 Oct;2(10):2367-73. doi: 10.1002/ece3.347. Epub 2012 Aug 24. Ecol Evol. 2012. PMID: 23145324 Free PMC article.
The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.
GIGA Community of Scientists; Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X. GIGA Community of Scientists, et al. J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084. J Hered. 2014. PMID: 24336862 Free PMC article.
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida).
Bracken-Grissom HD, Ahyong ST, Wilkinson RD, Feldmann RM, Schweitzer CE, Breinholt JW, Bendall M, Palero F, Chan TY, Felder DL, Robles R, Chu KH, Tsang LM, Kim D, Martin JW, Crandall KA. Bracken-Grissom HD, et al. Syst Biol. 2014 Jul;63(4):457-79. doi: 10.1093/sysbio/syu008. Epub 2014 Feb 20. Syst Biol. 2014. PMID: 24562813
35 results