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Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: bravo hc. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Smooth quantile normalization.
Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC. Hicks SC, et al. Among authors: bravo hc. Biostatistics. 2018 Apr 1;19(2):185-198. doi: 10.1093/biostatistics/kxx028. Biostatistics. 2018. PMID: 29036413 Free PMC article.
Increased methylation variation in epigenetic domains across cancer types.
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Hansen KD, et al. Among authors: bravo hc. Nat Genet. 2011 Jun 26;43(8):768-75. doi: 10.1038/ng.865. Nat Genet. 2011. PMID: 21706001 Free PMC article.
Capturing discrete latent structures: choose LDs over PCs.
Alexander TA, Irizarry RA, Bravo HC. Alexander TA, et al. Among authors: bravo hc. Biostatistics. 2022 Dec 12;24(1):1-16. doi: 10.1093/biostatistics/kxab030. Biostatistics. 2022. PMID: 34467372 Free PMC article.
58 results