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Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. Among authors: breinholt jw. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
The Development of an Infrastructure to Facilitate the Use of Whole Genome Sequencing for Population Health.
Walton NA, Hafen B, Graceffo S, Sutherland N, Emmerson M, Palmquist R, Formea CM, Purcell M, Heale B, Brown MA, Danford CJ, Rachamadugu SI, Person TN, Shortt KA, Christensen GB, Evans JM, Raghunath S, Johnson CP, Knight S, Le VT, Anderson JL, Van Meter M, Reading T, Haslem DS, Hansen IC, Batcher B, Barker T, Sheffield TJ, Yandava B, Taylor DP, Ranade-Kharkar P, Giauque CC, Eyring KR, Breinholt JW, Miller MR, Carter PR, Gillman JL, Gunn AW, Knowlton KU, Bonkowsky JL, Stefansson K, Nadauld LD, McLeod HL. Walton NA, et al. Among authors: breinholt jw. J Pers Med. 2022 Nov 8;12(11):1867. doi: 10.3390/jpm12111867. J Pers Med. 2022. PMID: 36579594 Free PMC article.
The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.
GIGA Community of Scientists; Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X. GIGA Community of Scientists, et al. J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084. J Hered. 2014. PMID: 24336862 Free PMC article.
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida).
Bracken-Grissom HD, Ahyong ST, Wilkinson RD, Feldmann RM, Schweitzer CE, Breinholt JW, Bendall M, Palero F, Chan TY, Felder DL, Robles R, Chu KH, Tsang LM, Kim D, Martin JW, Crandall KA. Bracken-Grissom HD, et al. Among authors: breinholt jw. Syst Biol. 2014 Jul;63(4):457-79. doi: 10.1093/sysbio/syu008. Epub 2014 Feb 20. Syst Biol. 2014. PMID: 24562813
Phylogeny and classification of Odonata using targeted genomics.
Bybee SM, Kalkman VJ, Erickson RJ, Frandsen PB, Breinholt JW, Suvorov A, Dijkstra KB, Cordero-Rivera A, Skevington JH, Abbott JC, Sanchez Herrera M, Lemmon AR, Moriarty Lemmon E, Ware JL. Bybee SM, et al. Among authors: breinholt jw. Mol Phylogenet Evol. 2021 Jul;160:107115. doi: 10.1016/j.ympev.2021.107115. Epub 2021 Feb 18. Mol Phylogenet Evol. 2021. PMID: 33609713 Free article.
41 results