Brinkman FS - Search Results

1

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, Jones SJ, Brinkman FS, Brunham RC, Tang P. Gardy JL, et al. Among authors: brinkman fs. N Engl J Med. 2011 Feb 24;364(8):730-9. doi: 10.1056/NEJMoa1003176. N Engl J Med. 2011. PMID: 21345102 Free article.

2

Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis.

de Koning AP, Brinkman FS, Jones SJ, Keeling PJ. de Koning AP, et al. Among authors: brinkman fs. Mol Biol Evol. 2000 Nov;17(11):1769-73. doi: 10.1093/oxfordjournals.molbev.a026275. Mol Biol Evol. 2000. PMID: 11070064 No abstract available.

3

PhyloBLAST: facilitating phylogenetic analysis of BLAST results.

Brinkman FS, Wan I, Hancock RE, Rose AM, Jones SJ. Brinkman FS, et al. Bioinformatics. 2001 Apr;17(4):385-7. doi: 10.1093/bioinformatics/17.4.385. Bioinformatics. 2001. PMID: 11301315

4

Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast.

Brinkman FS, Blanchard JL, Cherkasov A, Av-Gay Y, Brunham RC, Fernandez RC, Finlay BB, Otto SP, Ouellette BF, Keeling PJ, Rose AM, Hancock RE, Jones SJ, Greberg H. Brinkman FS, et al. Genome Res. 2002 Aug;12(8):1159-67. doi: 10.1101/gr.341802. Genome Res. 2002. PMID: 12176923 Free PMC article.

5

IslandPath: aiding detection of genomic islands in prokaryotes.

Hsiao W, Wan I, Jones SJ, Brinkman FS. Hsiao W, et al. Among authors: brinkman fs. Bioinformatics. 2003 Feb 12;19(3):418-20. doi: 10.1093/bioinformatics/btg004. Bioinformatics. 2003. PMID: 12584130

6

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.

Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K, Brinkman FS. Gardy JL, et al. Among authors: brinkman fs. Nucleic Acids Res. 2003 Jul 1;31(13):3613-7. doi: 10.1093/nar/gkg602. Nucleic Acids Res. 2003. PMID: 12824378 Free PMC article.

7

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.

Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FS. Gardy JL, et al. Among authors: brinkman fs. Bioinformatics. 2005 Mar 1;21(5):617-23. doi: 10.1093/bioinformatics/bti057. Epub 2004 Oct 22. Bioinformatics. 2005. PMID: 15501914

8

Functional characterization of a catabolic plasmid from polychlorinated- biphenyl-degrading Rhodococcus sp. strain RHA1.

Warren R, Hsiao WW, Kudo H, Myhre M, Dosanjh M, Petrescu A, Kobayashi H, Shimizu S, Miyauchi K, Masai E, Yang G, Stott JM, Schein JE, Shin H, Khattra J, Smailus D, Butterfield YS, Siddiqui A, Holt R, Marra MA, Jones SJ, Mohn WW, Brinkman FS, Fukuda M, Davies J, Eltis LD. Warren R, et al. Among authors: brinkman fs. J Bacteriol. 2004 Nov;186(22):7783-95. doi: 10.1128/JB.186.22.7783-7795.2004. J Bacteriol. 2004. PMID: 15516593 Free PMC article.

9

PSORTdb: a protein subcellular localization database for bacteria.

Rey S, Acab M, Gardy JL, Laird MR, deFays K, Lambert C, Brinkman FS. Rey S, et al. Among authors: brinkman fs. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D164-8. doi: 10.1093/nar/gki027. Nucleic Acids Res. 2005. PMID: 15608169 Free PMC article.

10

Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.

Winsor GL, Lo R, Ho Sui SJ, Ung KS, Huang S, Cheng D, Ching WK, Hancock RE, Brinkman FS. Winsor GL, et al. Among authors: brinkman fs. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D338-43. doi: 10.1093/nar/gki047. Nucleic Acids Res. 2005. PMID: 15608211 Free PMC article.

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