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Data standards for flow cytometry.
Spidlen J, Gentleman RC, Haaland PD, Langille M, Le Meur N, Ochs MF, Schmitt C, Smith CA, Treister AS, Brinkman RR. Spidlen J, et al. Among authors: brinkman rr. OMICS. 2006 Summer;10(2):209-14. doi: 10.1089/omi.2006.10.209. OMICS. 2006. PMID: 16901228 Free PMC article. Review.
MIFlowCyt: the minimum information about a Flow Cytometry Experiment.
Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, McWeeney S, Moloshok TD, Moore W, Nolan G, Nolan J, Nikolich-Zugich J, Parrish D, Purcell B, Qian Y, Selvaraj B, Smith C, Tchuvatkina O, Wertheimer A, Wilkinson P, Wilson C, Wood J, Zigon R; International Society for Advancement of Cytometry Data Standards Task Force; Scheuermann RH, Brinkman RR. Lee JA, et al. Among authors: brinkman rr. Cytometry A. 2008 Oct;73(10):926-30. doi: 10.1002/cyto.a.20623. Cytometry A. 2008. PMID: 18752282 Free PMC article.
Gating-ML: XML-based gating descriptions in flow cytometry.
Spidlen J, Leif RC, Moore W, Roederer M; International Society for the Advancement of Cytometry Data Standards Task Force; Brinkman RR. Spidlen J, et al. Among authors: brinkman rr. Cytometry A. 2008 Dec;73A(12):1151-7. doi: 10.1002/cyto.a.20637. Cytometry A. 2008. PMID: 18773465 Free PMC article.
flowCore: a Bioconductor package for high throughput flow cytometry.
Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R. Hahne F, et al. Among authors: brinkman rr. BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106. BMC Bioinformatics. 2009. PMID: 19358741 Free PMC article.
FuGEFlow: data model and markup language for flow cytometry.
Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR. Qian Y, et al. Among authors: brinkman rr. BMC Bioinformatics. 2009 Jun 16;10:184. doi: 10.1186/1471-2105-10-184. BMC Bioinformatics. 2009. PMID: 19531228 Free PMC article.
Per-channel basis normalization methods for flow cytometry data.
Hahne F, Khodabakhshi AH, Bashashati A, Wong CJ, Gascoyne RD, Weng AP, Seyfert-Margolis V, Bourcier K, Asare A, Lumley T, Gentleman R, Brinkman RR. Hahne F, et al. Among authors: brinkman rr. Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823. Cytometry A. 2010. PMID: 19899135 Free PMC article.
Data File Standard for Flow Cytometry, version FCS 3.1.
Spidlen J, Moore W, Parks D, Goldberg M, Bray C, Bierre P, Gorombey P, Hyun B, Hubbard M, Lange S, Lefebvre R, Leif R, Novo D, Ostruszka L, Treister A, Wood J, Murphy RF, Roederer M, Sudar D, Zigon R, Brinkman RR. Spidlen J, et al. Among authors: brinkman rr. Cytometry A. 2010 Jan;77(1):97-100. doi: 10.1002/cyto.a.20825. Cytometry A. 2010. PMID: 19937951 Free PMC article.
124 results