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The regulatory landscape of osteogenic differentiation.
Håkelien AM, Bryne JC, Harstad KG, Lorenz S, Paulsen J, Sun J, Mikkelsen TS, Myklebost O, Meza-Zepeda LA. Håkelien AM, et al. Among authors: bryne jc. Stem Cells. 2014 Oct;32(10):2780-93. doi: 10.1002/stem.1759. Stem Cells. 2014. PMID: 24898411
Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations.
Lorenz S, Barøy T, Sun J, Nome T, Vodák D, Bryne JC, Håkelien AM, Fernandez-Cuesta L, Möhlendick B, Rieder H, Szuhai K, Zaikova O, Ahlquist TC, Thomassen GO, Skotheim RI, Lothe RA, Tarpey PS, Campbell P, Flanagan A, Myklebost O, Meza-Zepeda LA. Lorenz S, et al. Among authors: bryne jc. Oncotarget. 2016 Feb 2;7(5):5273-88. doi: 10.18632/oncotarget.6567. Oncotarget. 2016. PMID: 26672768 Free PMC article.
Transcriptional features of genomic regulatory blocks.
Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B. Akalin A, et al. Among authors: bryne jc. Genome Biol. 2009;10(4):R38. doi: 10.1186/gb-2009-10-4-r38. Epub 2009 Apr 19. Genome Biol. 2009. PMID: 19374772 Free PMC article.
A systems approach to analyze transcription factors in mammalian cells.
Soler E, Andrieu-Soler C, Boer Ed, Bryne JC, Thongjuea S, Rijkers E, Demmers J, van IJcken W, Grosveld F. Soler E, et al. Among authors: bryne jc. Methods. 2011 Feb;53(2):151-62. doi: 10.1016/j.ymeth.2010.08.002. Epub 2010 Aug 10. Methods. 2011. PMID: 20705139 Review.
Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos.
Armant O, März M, Schmidt R, Ferg M, Diotel N, Ertzer R, Bryne JC, Yang L, Baader I, Reischl M, Legradi J, Mikut R, Stemple D, van IJcken W, van der Sloot A, Lenhard B, Strähle U, Rastegar S. Armant O, et al. Among authors: bryne jc. Dev Biol. 2013 Aug 15;380(2):351-62. doi: 10.1016/j.ydbio.2013.05.006. Epub 2013 May 14. Dev Biol. 2013. PMID: 23684812 Free PMC article.
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes.
Engelen E, Akinci U, Bryne JC, Hou J, Gontan C, Moen M, Szumska D, Kockx C, van Ijcken W, Dekkers DH, Demmers J, Rijkers EJ, Bhattacharya S, Philipsen S, Pevny LH, Grosveld FG, Rottier RJ, Lenhard B, Poot RA. Engelen E, et al. Among authors: bryne jc. Nat Genet. 2011 Jun;43(6):607-11. doi: 10.1038/ng.825. Epub 2011 May 1. Nat Genet. 2011. PMID: 21532573
A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells.
van Riel B, Pakozdi T, Brouwer R, Monteiro R, Tuladhar K, Franke V, Bryne JC, Jorna R, Rijkers EJ, van Ijcken W, Andrieu-Soler C, Demmers J, Patient R, Soler E, Lenhard B, Grosveld F. van Riel B, et al. Among authors: bryne jc. Mol Cell Biol. 2012 Oct;32(19):3814-22. doi: 10.1128/MCB.05938-11. Epub 2012 Jul 16. Mol Cell Biol. 2012. PMID: 22801375 Free PMC article.
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