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Improving breast cancer survival analysis through competition-based multidimensional modeling.
Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Moen Vollan HK, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA, Margolin AA. Bilal E, et al. Among authors: califano a. PLoS Comput Biol. 2013;9(5):e1003047. doi: 10.1371/journal.pcbi.1003047. Epub 2013 May 9. PLoS Comput Biol. 2013. PMID: 23671412 Free PMC article.
Transcriptional analysis of the B cell germinal center reaction.
Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R. Klein U, et al. Among authors: califano a. Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2639-44. doi: 10.1073/pnas.0437996100. Epub 2003 Feb 25. Proc Natl Acad Sci U S A. 2003. PMID: 12604779 Free PMC article.
Gene expression dynamics during germinal center transit in B cells.
Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R. Klein U, et al. Among authors: califano a. Ann N Y Acad Sci. 2003 Apr;987:166-72. doi: 10.1111/j.1749-6632.2003.tb06045.x. Ann N Y Acad Sci. 2003. PMID: 12727636 Review.
Tracking CD40 signaling during germinal center development.
Basso K, Klein U, Niu H, Stolovitzky GA, Tu Y, Califano A, Cattoretti G, Dalla-Favera R. Basso K, et al. Among authors: califano a. Blood. 2004 Dec 15;104(13):4088-96. doi: 10.1182/blood-2003-12-4291. Epub 2004 Aug 26. Blood. 2004. PMID: 15331443 Free article.
Reverse engineering of regulatory networks in human B cells.
Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A. Basso K, et al. Among authors: califano a. Nat Genet. 2005 Apr;37(4):382-90. doi: 10.1038/ng1532. Epub 2005 Mar 20. Nat Genet. 2005. PMID: 15778709
Reverse engineering cellular networks.
Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A. Margolin AA, et al. Among authors: califano a. Nat Protoc. 2006;1(2):662-71. doi: 10.1038/nprot.2006.106. Nat Protoc. 2006. PMID: 17406294
343 results