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RetroPath2.0: A retrosynthesis workflow for metabolic engineers.
Delépine B, Duigou T, Carbonell P, Faulon JL. Delépine B, et al. Among authors: carbonell p. Metab Eng. 2018 Jan;45:158-170. doi: 10.1016/j.ymben.2017.12.002. Epub 2017 Dec 9. Metab Eng. 2018. PMID: 29233745 Free article.
XTMS: pathway design in an eXTended metabolic space.
Carbonell P, Parutto P, Herisson J, Pandit SB, Faulon JL. Carbonell P, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W389-94. doi: 10.1093/nar/gku362. Epub 2014 May 3. Nucleic Acids Res. 2014. PMID: 24792156 Free PMC article.
Semisupervised Gaussian Process for Automated Enzyme Search.
Mellor J, Grigoras I, Carbonell P, Faulon JL. Mellor J, et al. Among authors: carbonell p. ACS Synth Biol. 2016 Jun 17;5(6):518-28. doi: 10.1021/acssynbio.5b00294. Epub 2016 Mar 30. ACS Synth Biol. 2016. PMID: 27007080
The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.
Hérisson J, Duigou T, du Lac M, Bazi-Kabbaj K, Sabeti Azad M, Buldum G, Telle O, El Moubayed Y, Carbonell P, Swainston N, Zulkower V, Kushwaha M, Baldwin GS, Faulon JL. Hérisson J, et al. Among authors: carbonell p. Nat Commun. 2022 Aug 29;13(1):5082. doi: 10.1038/s41467-022-32661-x. Nat Commun. 2022. PMID: 36038542 Free PMC article.
Extended Metabolic Space Modeling.
Carbonell P, Delépine B, Faulon JL. Carbonell P, et al. Methods Mol Biol. 2018;1671:83-96. doi: 10.1007/978-1-4939-7295-1_6. Methods Mol Biol. 2018. PMID: 29170954
150 results