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The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
FANTOM Consortium; Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sand… See abstract for full author list ➔ FANTOM Consortium, et al. Among authors: chalk am. Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19. Nat Genet. 2009. PMID: 19377474 Free PMC article.
Improved and automated prediction of effective siRNA.
Chalk AM, Wahlestedt C, Sonnhammer EL. Chalk AM, et al. Biochem Biophys Res Commun. 2004 Jun 18;319(1):264-74. doi: 10.1016/j.bbrc.2004.04.181. Biochem Biophys Res Commun. 2004. PMID: 15158471
Hematopoietic stem and progenitor cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia.
Vu T, Straube J, Porter AH, Bywater M, Song A, Ling V, Cooper L, Pali G, Bruedigam C, Jacquelin S, Green J, Magor G, Perkins A, Chalk AM, Walkley CR, Heidel FH, Mukhopadhyay P, Cloonan N, Gröschel S, Mallm JP, Fröhling S, Scholl C, Lane SW. Vu T, et al. Among authors: chalk am. Nat Commun. 2020 Jun 15;11(1):3021. doi: 10.1038/s41467-020-16840-2. Nat Commun. 2020. PMID: 32541670 Free PMC article.
Focusing on RISC assembly in mammalian cells.
Hong J, Wei N, Chalk A, Wang J, Song Y, Yi F, Qiao RP, Sonnhammer EL, Wahlestedt C, Liang Z, Du Q. Hong J, et al. Biochem Biophys Res Commun. 2008 Apr 11;368(3):703-8. doi: 10.1016/j.bbrc.2008.01.116. Epub 2008 Feb 4. Biochem Biophys Res Commun. 2008. PMID: 18252196 Free article.
siRNAdb: a database of siRNA sequences.
Chalk AM, Warfinge RE, Georgii-Hemming P, Sonnhammer EL. Chalk AM, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D131-4. doi: 10.1093/nar/gki136. Nucleic Acids Res. 2005. PMID: 15608162 Free PMC article.
Sfixem--graphical sequence feature display in Java.
Chalk AM, Wennerberg M, Sonnhammer EL. Chalk AM, et al. Bioinformatics. 2004 Oct 12;20(15):2488-90. doi: 10.1093/bioinformatics/bth265. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087316
40 results