Chapagain PP - Search Results

1

Exploring structural and optical properties of fluorescent proteins by squeezing: modeling high-pressure effects on the mStrawberry and mCherry red fluorescent proteins.

Laurent AD, Mironov VA, Chapagain PP, Nemukhin AV, Krylov AI. Laurent AD, et al. Among authors: chapagain pp. J Phys Chem B. 2012 Oct 18;116(41):12426-40. doi: 10.1021/jp3060944. Epub 2012 Oct 5. J Phys Chem B. 2012. PMID: 22988813 Free PMC article.

2

Distinctive Features of the XBB.1.5 and XBB.1.16 Spike Protein Receptor-Binding Domains and Their Roles in Conformational Changes and Angiotensin-Converting Enzyme 2 Binding.

Sharma T, Gerstman B, Chapagain P. Sharma T, et al. Int J Mol Sci. 2023 Aug 9;24(16):12586. doi: 10.3390/ijms241612586. Int J Mol Sci. 2023. PMID: 37628766 Free PMC article.

3

Restoring susceptibility to aminoglycosides: identifying small molecule inhibitors of enzymatic inactivation.

Magaña AJ, Sklenicka J, Pinilla C, Giulianotti M, Chapagain P, Santos R, Ramirez MS, Tolmasky ME. Magaña AJ, et al. RSC Med Chem. 2023 Jul 21;14(9):1591-1602. doi: 10.1039/d3md00226h. eCollection 2023 Sep 19. RSC Med Chem. 2023. PMID: 37731693 Review.

4

The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas.

Katsushima K, Pokhrel R, Mahmud I, Yuan M, Murad R, Baral P, Zhou R, Chapagain P, Garrett T, Stapleton S, Jallo G, Bettegowda C, Raabe E, Wechsler-Reya RJ, Eberhart CG, Perera RJ. Katsushima K, et al. Acta Neuropathol Commun. 2023 Mar 10;11(1):38. doi: 10.1186/s40478-023-01521-0. Acta Neuropathol Commun. 2023. PMID: 36899402 Free PMC article.

5

[No title available]

[No authors listed] [No authors listed] PMID: 36782941

6

A 5'-Flanking C/G Pair at the Core Region Enhances the Recognition and Binding of Kaiso to Methylated DNA.

Thapa B, Adhikari NP, Tiwari PB, Chapagain PP. Thapa B, et al. Among authors: chapagain pp. J Chem Inf Model. 2023 Apr 10;63(7):2095-2103. doi: 10.1021/acs.jcim.2c01294. Epub 2022 Dec 23. J Chem Inf Model. 2023. PMID: 36563044

7

Multi-functional auto-fluorescent nanogels for theranostics.

Vashist A, Raymond AD, Chapagain P, Vashist A, Arias AY, Kolishetti N, Nair M. Vashist A, et al. J Neurovirol. 2023 Jun;29(3):252-257. doi: 10.1007/s13365-023-01138-y. Epub 2023 May 29. J Neurovirol. 2023. PMID: 37248372 Free PMC article. Review.

8

RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation.

Tsegay PS, Hernandez D, Qu F, Olatunji M, Mamun Y, Chapagain P, Liu Y. Tsegay PS, et al. Nucleic Acids Res. 2023 Jan 11;51(1):166-181. doi: 10.1093/nar/gkac1178. Nucleic Acids Res. 2023. PMID: 36533524 Free PMC article.

9

Exploring the diffusion of molecular oxygen in the red fluorescent protein mCherry using explicit oxygen molecular dynamics simulations.

Regmi CK, Bhandari YR, Gerstman BS, Chapagain PP. Regmi CK, et al. Among authors: chapagain pp. J Phys Chem B. 2013 Feb 28;117(8):2247-53. doi: 10.1021/jp308366y. Epub 2013 Feb 14. J Phys Chem B. 2013. PMID: 23363049 Free PMC article.

10

Hydrogen bond flexibility correlates with Stokes shift in mPlum variants.

Konold P, Regmi CK, Chapagain PP, Gerstman BS, Jimenez R. Konold P, et al. Among authors: chapagain pp. J Phys Chem B. 2014 Mar 20;118(11):2940-8. doi: 10.1021/jp412371y. Epub 2014 Mar 10. J Phys Chem B. 2014. PMID: 24611679 Free PMC article.

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