Charlebois RL - Search Results

1

Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores.

Clarke GD, Beiko RG, Ragan MA, Charlebois RL. Clarke GD, et al. Among authors: charlebois rl. J Bacteriol. 2002 Apr;184(8):2072-80. doi: 10.1128/JB.184.8.2072-2080.2002. J Bacteriol. 2002. PMID: 11914337 Free PMC article.

2

Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission.

Ragan MA, Charlebois RL. Ragan MA, et al. Among authors: charlebois rl. Int J Syst Evol Microbiol. 2002 May;52(Pt 3):777-787. doi: 10.1099/00207713-52-3-777. Int J Syst Evol Microbiol. 2002. PMID: 12054238

3

Microbial phylogenomics: Branching out.

Charlebois RL, Beiko RG, Ragan MA. Charlebois RL, et al. Nature. 2003 Jan 16;421(6920):217. doi: 10.1038/421217a. Nature. 2003. PMID: 12529621 No abstract available.

4

Characterization of species-specific genes using a flexible, web-based querying system.

Charlebois RL, Clarke GD, Beiko RG, St Jean A. Charlebois RL, et al. FEMS Microbiol Lett. 2003 Aug 29;225(2):213-20. doi: 10.1016/S0378-1097(03)00512-3. FEMS Microbiol Lett. 2003. PMID: 12951244

5

The Sulfolobus solfataricus P2 genome project.

Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW. Charlebois RL, et al. FEBS Lett. 1996 Jun 24;389(1):88-91. doi: 10.1016/0014-5793(96)00525-x. FEBS Lett. 1996. PMID: 8682213 Free article. Review.

6

A simulation test bed for hypotheses of genome evolution.

Beiko RG, Charlebois RL. Beiko RG, et al. Among authors: charlebois rl. Bioinformatics. 2007 Apr 1;23(7):825-31. doi: 10.1093/bioinformatics/btm024. Epub 2007 Jan 31. Bioinformatics. 2007. PMID: 17267425

7

GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA.

Beiko RG, Charlebois RL. Beiko RG, et al. Among authors: charlebois rl. BMC Bioinformatics. 2005 Feb 22;6:36. doi: 10.1186/1471-2105-6-36. BMC Bioinformatics. 2005. PMID: 15725347 Free PMC article.

8

The impact of reticulate evolution on genome phylogeny.

Beiko RG, Doolittle WF, Charlebois RL. Beiko RG, et al. Among authors: charlebois rl. Syst Biol. 2008 Dec;57(6):844-56. doi: 10.1080/10635150802559265. Syst Biol. 2008. PMID: 19085328

9

Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2.

Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL. Sensen CW, et al. Among authors: charlebois rl. Mol Microbiol. 1996 Oct;22(1):175-91. doi: 10.1111/j.1365-2958.1996.tb02666.x. Mol Microbiol. 1996. PMID: 8899719

10

An archaebacterial homolog of pelota, a meiotic cell division protein in eukaryotes.

Ragan MA, Logsdon JM Jr, Sensen CW, Charlebois RL, Doolittle WF. Ragan MA, et al. Among authors: charlebois rl. FEMS Microbiol Lett. 1996 Nov 1;144(2-3):151-5. doi: 10.1111/j.1574-6968.1996.tb08522.x. FEMS Microbiol Lett. 1996. PMID: 8900058

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