Chauve C - Search Results

1

An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework.

Doyon JP, Hamel S, Chauve C. Doyon JP, et al. Among authors: chauve c. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):26-39. doi: 10.1109/TCBB.2011.64. Epub 2011 Mar 30. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 21464510

2

Space of gene/species trees reconciliations and parsimonious models.

Doyon JP, Chauve C, Hamel S. Doyon JP, et al. Among authors: chauve c. J Comput Biol. 2009 Oct;16(10):1399-418. doi: 10.1089/cmb.2009.0095. J Comput Biol. 2009. PMID: 19754270

3

Branch-and-bound approach for parsimonious inference of a species tree from a set of gene family trees.

Doyon JP, Chauve C. Doyon JP, et al. Among authors: chauve c. Adv Exp Med Biol. 2011;696:287-95. doi: 10.1007/978-1-4419-7046-6_29. Adv Exp Med Biol. 2011. PMID: 21431569

4

Gene family evolution by duplication, speciation, and loss.

Chauve C, Doyon JP, El-Mabrouk N. Chauve C, et al. J Comput Biol. 2008 Oct;15(8):1043-62. doi: 10.1089/cmb.2008.0054. J Comput Biol. 2008. PMID: 18781833

5

Gene Tree Construction and Correction Using SuperTree and Reconciliation.

Lafond M, Chauve C, El-Mabrouk N, Ouangraoua A. Lafond M, et al. Among authors: chauve c. IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1560-1570. doi: 10.1109/TCBB.2017.2720581. Epub 2017 Jun 27. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 28678712

6

ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.

Jacox E, Chauve C, Szöllősi GJ, Ponty Y, Scornavacca C. Jacox E, et al. Among authors: chauve c. Bioinformatics. 2016 Jul 1;32(13):2056-8. doi: 10.1093/bioinformatics/btw105. Epub 2016 Feb 26. Bioinformatics. 2016. PMID: 27153713 Free article.

7

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.

Luhmann N, Lafond M, Thevenin A, Ouangraoua A, Wittler R, Chauve C. Luhmann N, et al. Among authors: chauve c. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1364-1373. doi: 10.1109/TCBB.2017.2661761. Epub 2017 Jan 31. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 28166504

8

Perfect sorting by reversals is not always difficult.

Bérard S, Bergeron A, Chauve C, Paul C. Bérard S, et al. Among authors: chauve c. IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):4-16. doi: 10.1109/TCBB.2007.1011. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17277409

9

Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes.

Bérard S, Chateau A, Chauve C, Paul C, Tannier E. Bérard S, et al. Among authors: chauve c. J Comput Biol. 2009 Oct;16(10):1287-309. doi: 10.1089/cmb.2009.0088. J Comput Biol. 2009. PMID: 19803733

10

Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework.

Luhmann N, Chauve C, Stoye J, Wittler R. Luhmann N, et al. Among authors: chauve c. IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):2094-2100. doi: 10.1007/978-3-319-12418-6_17. Epub 2018 Mar 15. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 29993816

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