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comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence.
Verghese B, Lok M, Wen J, Alessandria V, Chen Y, Kathariou S, Knabel S. Verghese B, et al. Among authors: chen y. Appl Environ Microbiol. 2011 May;77(10):3279-92. doi: 10.1128/AEM.00546-11. Epub 2011 Mar 25. Appl Environ Microbiol. 2011. PMID: 21441318 Free PMC article.
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P. Jackson BR, et al. Among authors: chen y. Clin Infect Dis. 2016 Aug 1;63(3):380-6. doi: 10.1093/cid/ciw242. Epub 2016 Apr 18. Clin Infect Dis. 2016. PMID: 27090985 Free PMC article.
Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing.
Chen Y, Burall LS, Luo Y, Timme R, Melka D, Muruvanda T, Payne J, Wang C, Kastanis G, Maounounen-Laasri A, De Jesus AJ, Curry PE, Stones R, K'Aluoch O, Liu E, Salter M, Hammack TS, Evans PS, Parish M, Allard MW, Datta A, Strain EA, Brown EW. Chen Y, et al. Appl Environ Microbiol. 2016 Nov 21;82(24):7030-7040. doi: 10.1128/AEM.01486-16. Print 2016 Dec 15. Appl Environ Microbiol. 2016. PMID: 27694232 Free PMC article.
Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad.
Chen Y, Luo Y, Pettengill J, Timme R, Melka D, Doyle M, Jackson A, Parish M, Hammack TS, Allard MW, Brown EW, Strain EA. Chen Y, et al. J Clin Microbiol. 2017 Mar;55(3):931-941. doi: 10.1128/JCM.02140-16. Epub 2017 Jan 4. J Clin Microbiol. 2017. PMID: 28053218 Free PMC article.
Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese, United States, 2013.
Chen Y, Luo Y, Carleton H, Timme R, Melka D, Muruvanda T, Wang C, Kastanis G, Katz LS, Turner L, Fritzinger A, Moore T, Stones R, Blankenship J, Salter M, Parish M, Hammack TS, Evans PS, Tarr CL, Allard MW, Strain EA, Brown EW. Chen Y, et al. Appl Environ Microbiol. 2017 Jul 17;83(15):e00633-17. doi: 10.1128/AEM.00633-17. Print 2017 Aug 1. Appl Environ Microbiol. 2017. PMID: 28550058 Free PMC article.
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