Ciccarelli FD - Search Results

1

SMART 4.0: towards genomic data integration.

Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P. Letunic I, et al. Among authors: ciccarelli fd. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4. doi: 10.1093/nar/gkh088. Nucleic Acids Res. 2004. PMID: 14681379 Free PMC article.

2

Recent improvements to the SMART domain-based sequence annotation resource.

Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P. Letunic I, et al. Nucleic Acids Res. 2002 Jan 1;30(1):242-4. doi: 10.1093/nar/30.1.242. Nucleic Acids Res. 2002. PMID: 11752305 Free PMC article.

3

CASH--a beta-helix domain widespread among carbohydrate-binding proteins.

Ciccarelli FD, Copley RR, Doerks T, Russell RB, Bork P. Ciccarelli FD, et al. Trends Biochem Sci. 2002 Feb;27(2):59-62. doi: 10.1016/s0968-0004(01)02046-1. Trends Biochem Sci. 2002. PMID: 11852237

4

The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold.

Ciccarelli FD, Bork P, Kerkhoff E. Ciccarelli FD, et al. Trends Biochem Sci. 2003 Jul;28(7):349-52. doi: 10.1016/S0968-0004(03)00116-6. Trends Biochem Sci. 2003. PMID: 12877999 No abstract available.

5

The WHy domain mediates the response to desiccation in plants and bacteria.

Ciccarelli FD, Bork P. Ciccarelli FD, et al. Bioinformatics. 2005 Apr 15;21(8):1304-7. doi: 10.1093/bioinformatics/bti221. Epub 2004 Dec 14. Bioinformatics. 2005. PMID: 15598830

6

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.

Ciccarelli FD, Izaurralde E, Bork P. Ciccarelli FD, et al. BMC Bioinformatics. 2003 Dec 19;4:64. doi: 10.1186/1471-2105-4-64. BMC Bioinformatics. 2003. PMID: 14687415 Free PMC article.

7

Complex genomic rearrangements lead to novel primate gene function.

Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P. Ciccarelli FD, et al. Genome Res. 2005 Mar;15(3):343-51. doi: 10.1101/gr.3266405. Epub 2005 Feb 14. Genome Res. 2005. PMID: 15710750 Free PMC article.

8

Toward automatic reconstruction of a highly resolved tree of life.

Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. Ciccarelli FD, et al. Science. 2006 Mar 3;311(5765):1283-7. doi: 10.1126/science.1123061. Science. 2006. PMID: 16513982 Free article.

9

NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria.

Andrade MA, Ciccarelli FD, Perez-Iratxeta C, Bork P. Andrade MA, et al. Among authors: ciccarelli fd. Genome Biol. 2002 Aug 15;3(9):RESEARCH0047. doi: 10.1186/gb-2002-3-9-research0047. Epub 2002 Aug 15. Genome Biol. 2002. PMID: 12225586 Free PMC article.

10

A complex prediction: three-dimensional model of the yeast exosome.

Aloy P, Ciccarelli FD, Leutwein C, Gavin AC, Superti-Furga G, Bork P, Bottcher B, Russell RB. Aloy P, et al. Among authors: ciccarelli fd. EMBO Rep. 2002 Jul;3(7):628-35. doi: 10.1093/embo-reports/kvf135. EMBO Rep. 2002. PMID: 12101094 Free PMC article.

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