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The reality of pervasive transcription.
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. Clark MB, et al. PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. PLoS Biol. 2011. PMID: 21765801 Free PMC article.
lncRNAdb: a reference database for long noncoding RNAs.
Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS. Amaral PP, et al. Among authors: clark mb. Nucleic Acids Res. 2011 Jan;39(Database issue):D146-51. doi: 10.1093/nar/gkq1138. Epub 2010 Nov 25. Nucleic Acids Res. 2011. PMID: 21112873 Free PMC article.
Long noncoding RNAs in cell biology.
Clark MB, Mattick JS. Clark MB, et al. Semin Cell Dev Biol. 2011 Jun;22(4):366-76. doi: 10.1016/j.semcdb.2011.01.001. Epub 2011 Jan 20. Semin Cell Dev Biol. 2011. PMID: 21256239 Review.
RNA lights up.
Mattick JS, Clark MB. Mattick JS, et al. Among authors: clark mb. Nat Biotechnol. 2011 Oct 13;29(10):883-4. doi: 10.1038/nbt.2003. Nat Biotechnol. 2011. PMID: 21997629 No abstract available.
Genome-wide analysis of long noncoding RNA stability.
Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS. Clark MB, et al. Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9. Genome Res. 2012. PMID: 22406755 Free PMC article.
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS. Gascoigne DK, et al. Among authors: clark mb. Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7. Bioinformatics. 2012. PMID: 23044541
DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.
Mercer TR, Edwards SL, Clark MB, Neph SJ, Wang H, Stergachis AB, John S, Sandstrom R, Li G, Sandhu KS, Ruan Y, Nielsen LK, Mattick JS, Stamatoyannopoulos JA. Mercer TR, et al. Among authors: clark mb. Nat Genet. 2013 Aug;45(8):852-9. doi: 10.1038/ng.2677. Epub 2013 Jun 23. Nat Genet. 2013. PMID: 23793028 Free PMC article.
132 results