Cobey S - Search Results

1

Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans.

Koelle K, Cobey S, Grenfell B, Pascual M. Koelle K, et al. Among authors: cobey s. Science. 2006 Dec 22;314(5807):1898-903. doi: 10.1126/science.1132745. Science. 2006. PMID: 17185596

2

Global migration dynamics underlie evolution and persistence of human influenza A (H3N2).

Bedford T, Cobey S, Beerli P, Pascual M. Bedford T, et al. Among authors: cobey s. PLoS Pathog. 2010 May 27;6(5):e1000918. doi: 10.1371/journal.ppat.1000918. PLoS Pathog. 2010. PMID: 20523898 Free PMC article.

3

Capturing escape in infectious disease dynamics.

Cobey S, Koelle K. Cobey S, et al. Trends Ecol Evol. 2008 Oct;23(10):572-7. doi: 10.1016/j.tree.2008.06.008. Epub 2008 Aug 19. Trends Ecol Evol. 2008. PMID: 18715671 Review.

4

Ecological factors driving the long-term evolution of influenza's host range.

Cobey S, Pascual M, Dieckmann U. Cobey S, et al. Proc Biol Sci. 2010 Sep 22;277(1695):2803-10. doi: 10.1098/rspb.2010.0519. Epub 2010 May 5. Proc Biol Sci. 2010. PMID: 20444714 Free PMC article.

5

Consequences of host heterogeneity, epitope immunodominance, and immune breadth for strain competition.

Cobey S, Pascual M. Cobey S, et al. J Theor Biol. 2011 Feb 7;270(1):80-7. doi: 10.1016/j.jtbi.2010.11.009. Epub 2010 Nov 18. J Theor Biol. 2011. PMID: 21093455 Free PMC article.

6

Strength and tempo of selection revealed in viral gene genealogies.

Bedford T, Cobey S, Pascual M. Bedford T, et al. Among authors: cobey s. BMC Evol Biol. 2011 Jul 25;11:220. doi: 10.1186/1471-2148-11-220. BMC Evol Biol. 2011. PMID: 21787390 Free PMC article.

7

Lineage-specific protection and immune imprinting shape the age distributions of influenza B cases.

Vieira MC, Donato CM, Arevalo P, Rimmelzwaan GF, Wood T, Lopez L, Huang QS, Dhanasekaran V, Koelle K, Cobey S. Vieira MC, et al. Among authors: cobey s. Nat Commun. 2021 Jul 14;12(1):4313. doi: 10.1038/s41467-021-24566-y. Nat Commun. 2021. PMID: 34262041 Free PMC article.

8

CpG-creating mutations are costly in many human viruses.

Caudill VR, Qin S, Winstead R, Kaur J, Tisthammer K, Pineda EG, Solis C, Cobey S, Bedford T, Carja O, Eggo RM, Koelle K, Lythgoe K, Regoes R, Roy S, Allen N, Aviles M, Baker BA, Bauer W, Bermudez S, Carlson C, Castellanos E, Catalan FL, Chemel AK, Elliot J, Evans D, Fiutek N, Fryer E, Goodfellow SM, Hecht M, Hopp K, Hopson ED Jr, Jaberi A, Kinney C, Lao D, Le A, Lo J, Lopez AG, López A, Lorenzo FG, Luu GT, Mahoney AR, Melton RL, Nascimento GD, Pradhananga A, Rodrigues NS, Shieh A, Sims J, Singh R, Sulaeman H, Thu R, Tran K, Tran L, Winters EJ, Wong A, Pennings PS. Caudill VR, et al. Among authors: cobey s. Evol Ecol. 2020;34(3):339-359. doi: 10.1007/s10682-020-10039-z. Epub 2020 Apr 24. Evol Ecol. 2020. PMID: 32508375 Free PMC article.

9

Middle-aged individuals may be in a perpetual state of H3N2 influenza virus susceptibility.

Gouma S, Kim K, Weirick ME, Gumina ME, Branche A, Topham DJ, Martin ET, Monto AS, Cobey S, Hensley SE. Gouma S, et al. Among authors: cobey s. Nat Commun. 2020 Sep 11;11(1):4566. doi: 10.1038/s41467-020-18465-x. Nat Commun. 2020. PMID: 32917903 Free PMC article.

10

Explaining the geographical origins of seasonal influenza A (H3N2).

Wen F, Bedford T, Cobey S. Wen F, et al. Among authors: cobey s. Proc Biol Sci. 2016 Sep 14;283(1838):20161312. doi: 10.1098/rspb.2016.1312. Proc Biol Sci. 2016. PMID: 27629034 Free PMC article.

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