Couger MB - Search Results

1

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.

Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. Haas BJ, et al. Among authors: couger mb. Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11. Nat Protoc. 2013. PMID: 23845962 Free PMC article.

2

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.

Bryant DM, Johnson K, DiTommaso T, Tickle T, Couger MB, Payzin-Dogru D, Lee TJ, Leigh ND, Kuo TH, Davis FG, Bateman J, Bryant S, Guzikowski AR, Tsai SL, Coyne S, Ye WW, Freeman RM Jr, Peshkin L, Tabin CJ, Regev A, Haas BJ, Whited JL. Bryant DM, et al. Among authors: couger mb. Cell Rep. 2017 Jan 17;18(3):762-776. doi: 10.1016/j.celrep.2016.12.063. Cell Rep. 2017. PMID: 28099853 Free PMC article.

3

Enabling large-scale next-generation sequence assembly with Blacklight.

Couger MB, Pipes L, Squina F, Prade R, Siepel A, Palermo R, Katze MG, Mason CE, Blood PD. Couger MB, et al. Concurr Comput. 2014 Sep 10;26(13):2157-2166. doi: 10.1002/cpe.3231. Concurr Comput. 2014. PMID: 25294974 Free PMC article.

4

Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis.

Moghadam F, Couger MB, Russ B, Ramsey R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Moghadam F, et al. Among authors: couger mb. Genom Data. 2016 Sep 20;10:63-68. doi: 10.1016/j.gdata.2016.09.006. eCollection 2016 Dec. Genom Data. 2016. PMID: 27699151 Free PMC article.

5

Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates.

Hanafy RA, Couger MB, Baker K, Murphy C, O'Kane SD, Budd C, French DP, Hoff WD, Youssef N. Hanafy RA, et al. Among authors: couger mb. Genom Data. 2016 Aug 8;9:148-53. doi: 10.1016/j.gdata.2016.08.006. eCollection 2016 Sep. Genom Data. 2016. PMID: 27583205 Free PMC article.

6

Research Resource: The Dexamethasone Transcriptome in Hypothalamic Embryonic Neural Stem Cells.

Frahm KA, Peffer ME, Zhang JY, Luthra S, Chakka AB, Couger MB, Chandran UR, Monaghan AP, DeFranco DB. Frahm KA, et al. Among authors: couger mb. Mol Endocrinol. 2016 Jan;30(1):144-54. doi: 10.1210/me.2015-1258. Epub 2015 Nov 25. Mol Endocrinol. 2016. PMID: 26606517 Free PMC article.

7

Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential.

Miller NT, Fuller D, Couger MB, Bagazinski M, Boyne P, Devor RC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Miller NT, et al. Among authors: couger mb. Genom Data. 2016 Aug 4;9:154-9. doi: 10.1016/j.gdata.2016.08.004. eCollection 2016 Sep. Genom Data. 2016. PMID: 27583206 Free PMC article.

8

Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential.

Avramov AP, Couger MB, Hartley EL, Land C, Wellendorf R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Avramov AP, et al. Among authors: couger mb. Genom Data. 2016 Sep 17;10:54-60. doi: 10.1016/j.gdata.2016.09.005. eCollection 2016 Dec. Genom Data. 2016. PMID: 27699150 Free PMC article.

9

Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants.

Calkins S, Couger MB, Jackson C, Zandler J, Hudgins GC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Calkins S, et al. Among authors: couger mb. Genom Data. 2016 Oct 7;10:91-96. doi: 10.1016/j.gdata.2016.10.003. eCollection 2016 Dec. Genom Data. 2016. PMID: 27766204 Free PMC article.

10

Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.

Mandelli F, Oliveira Ramires B, Couger MB, Paixão DA, Camilo CM, Polikarpov I, Prade R, Riaño-Pachón DM, Squina FM. Mandelli F, et al. Among authors: couger mb. Genome Announc. 2015 May 14;3(3):e00475-15. doi: 10.1128/genomeA.00475-15. Genome Announc. 2015. PMID: 25977443 Free PMC article.

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