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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.
Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR. Normand P, et al. Among authors: daubin v. Genome Res. 2007 Jan;17(1):7-15. doi: 10.1101/gr.5798407. Epub 2006 Dec 6. Genome Res. 2007. PMID: 17151343 Free PMC article.
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations.
Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Parales RE, Detter C, Pujic P, Bruce D, Lavire C, Challacombe JF, Brettin TS, Berry AM. Barabote RD, et al. Among authors: daubin v. Genome Res. 2009 Jun;19(6):1033-43. doi: 10.1101/gr.084848.108. Epub 2009 Mar 6. Genome Res. 2009. PMID: 19270083 Free PMC article.
Genome-scale coestimation of species and gene trees.
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V. Boussau B, et al. Among authors: daubin v. Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6. Genome Res. 2013. PMID: 23132911 Free PMC article.
Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.
Sen A, Daubin V, Abrouk D, Gifford I, Berry AM, Normand P. Sen A, et al. Among authors: daubin v. Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3821-3832. doi: 10.1099/ijs.0.063966-0. Epub 2014 Aug 28. Int J Syst Evol Microbiol. 2014. PMID: 25168610
64 results