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IVT-seq reveals extreme bias in RNA sequencing.
Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB. Lahens NF, et al. Among authors: dueck h. Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86. Genome Biol. 2014. PMID: 24981968 Free PMC article.
Assessing characteristics of RNA amplification methods for single cell RNA sequencing.
Dueck HR, Ai R, Camarena A, Ding B, Dominguez R, Evgrafov OV, Fan JB, Fisher SA, Herstein JS, Kim TK, Kim JM, Lin MY, Liu R, Mack WJ, McGroty S, Nguyen JD, Salathia N, Shallcross J, Souaiaia T, Spaethling JM, Walker CP, Wang J, Wang K, Wang W, Wildberg A, Zheng L, Chow RH, Eberwine J, Knowles JA, Zhang K, Kim J. Dueck HR, et al. BMC Genomics. 2016 Nov 24;17(1):966. doi: 10.1186/s12864-016-3300-3. BMC Genomics. 2016. PMID: 27881084 Free PMC article.
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.
Lovatt D, Ruble BK, Lee J, Dueck H, Kim TK, Fisher S, Francis C, Spaethling JM, Wolf JA, Grady MS, Ulyanova AV, Yeldell SB, Griepenburg JC, Buckley PT, Kim J, Sul JY, Dmochowski IJ, Eberwine J. Lovatt D, et al. Among authors: dueck h. Nat Methods. 2014 Feb;11(2):190-6. doi: 10.1038/nmeth.2804. Epub 2014 Jan 12. Nat Methods. 2014. PMID: 24412976 Free PMC article.
Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.
Spaethling JM, Piel D, Dueck H, Buckley PT, Morris JF, Fisher SA, Lee J, Sul JY, Kim J, Bartfai T, Beck SG, Eberwine JH. Spaethling JM, et al. Among authors: dueck h. FASEB J. 2014 Feb;28(2):771-80. doi: 10.1096/fj.13-240267. Epub 2013 Nov 5. FASEB J. 2014. PMID: 24192459 Free PMC article.
SAVER: gene expression recovery for single-cell RNA sequencing.
Huang M, Wang J, Torre E, Dueck H, Shaffer S, Bonasio R, Murray JI, Raj A, Li M, Zhang NR. Huang M, et al. Among authors: dueck h. Nat Methods. 2018 Jul;15(7):539-542. doi: 10.1038/s41592-018-0033-z. Epub 2018 Jun 25. Nat Methods. 2018. PMID: 29941873 Free PMC article.
Gene expression distribution deconvolution in single-cell RNA sequencing.
Wang J, Huang M, Torre E, Dueck H, Shaffer S, Murray J, Raj A, Li M, Zhang NR. Wang J, et al. Among authors: dueck h. Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6437-E6446. doi: 10.1073/pnas.1721085115. Epub 2018 Jun 26. Proc Natl Acad Sci U S A. 2018. PMID: 29946020 Free PMC article.
18 results