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Page 1
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H. Orchard S, et al. Among authors: duesbury m. Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13. Nucleic Acids Res. 2014. PMID: 24234451 Free PMC article.
WormBase: a comprehensive resource for nematode research.
Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. Harris TW, et al. Among authors: duesbury m. Nucleic Acids Res. 2010 Jan;38(Database issue):D463-7. doi: 10.1093/nar/gkp952. Epub 2009 Nov 12. Nucleic Acids Res. 2010. PMID: 19910365 Free PMC article.
The IntAct molecular interaction database in 2012.
Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, Duesbury M, Dumousseau M, Feuermann M, Hinz U, Jandrasits C, Jimenez RC, Khadake J, Mahadevan U, Masson P, Pedruzzi I, Pfeiffenberger E, Porras P, Raghunath A, Roechert B, Orchard S, Hermjakob H. Kerrien S, et al. Among authors: duesbury m. Nucleic Acids Res. 2012 Jan;40(Database issue):D841-6. doi: 10.1093/nar/gkr1088. Epub 2011 Nov 24. Nucleic Acids Res. 2012. PMID: 22121220 Free PMC article.
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.
Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, Orchard S, Choi H, Ping P, Zong NC, Askenazi M, Habermann BH, Hermjakob H. Villaveces JM, et al. Among authors: duesbury m. Database (Oxford). 2015 Feb 4;2015:bau131. doi: 10.1093/database/bau131. Print 2015. Database (Oxford). 2015. PMID: 25652942 Free PMC article.
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.
IMEx Consortium Curators; Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, Porras P. IMEx Consortium Curators, et al. Among authors: duesbury m. Nat Commun. 2019 Jan 2;10(1):10. doi: 10.1038/s41467-018-07709-6. Nat Commun. 2019. PMID: 30602777 Free PMC article.
Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.
IMEx Consortium contributing authors; Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, Porras P. IMEx Consortium contributing authors, et al. Among authors: duesbury m. Nat Commun. 2019 Mar 4;10(1):1098. doi: 10.1038/s41467-019-08814-w. Nat Commun. 2019. PMID: 30833551 Free PMC article.
The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions.
Perfetto L, Pastrello C, Del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, Pellegrini M, Orchard S, Jurisica I, Hermjakob HH, Porras P. Perfetto L, et al. Among authors: duesbury m. bioRxiv [Preprint]. 2020 Jun 16:2020.06.16.153817. doi: 10.1101/2020.06.16.153817. bioRxiv. 2020. PMID: 32587962 Free PMC article. Updated. Preprint.
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Perfetto L, Pastrello C, Del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, Pellegrini M, Orchard S, Jurisica I, Hermjakob H, Porras P. Perfetto L, et al. Among authors: duesbury m. Database (Oxford). 2020 Jan 1;2020:baaa096. doi: 10.1093/database/baaa096. Database (Oxford). 2020. PMID: 33206959 Free PMC article.
Towards a unified open access dataset of molecular interactions.
Porras P, Barrera E, Bridge A, Del-Toro N, Cesareni G, Duesbury M, Hermjakob H, Iannuccelli M, Jurisica I, Kotlyar M, Licata L, Lovering RC, Lynn DJ, Meldal B, Nanduri B, Paneerselvam K, Panni S, Pastrello C, Pellegrini M, Perfetto L, Rahimzadeh N, Ratan P, Ricard-Blum S, Salwinski L, Shirodkar G, Shrivastava A, Orchard S. Porras P, et al. Among authors: duesbury m. Nat Commun. 2020 Dec 1;11(1):6144. doi: 10.1038/s41467-020-19942-z. Nat Commun. 2020. PMID: 33262342 Free PMC article. Review.
13 results