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Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.
J Cheminform. 2017 Dec 19;9(1):64. doi: 10.1186/s13321-017-0252-9.
J Cheminform. 2017.
PMID: 29260340
Free PMC article.
RetroPath2.0: A retrosynthesis workflow for metabolic engineers.
Delépine B, Duigou T, Carbonell P, Faulon JL.
Delépine B, et al. Among authors: duigou t.
Metab Eng. 2018 Jan;45:158-170. doi: 10.1016/j.ymben.2017.12.002. Epub 2017 Dec 9.
Metab Eng. 2018.
PMID: 29233745
Free article.
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Enzyme Discovery: Enzyme Selection and Pathway Design.
Carbonell P, Koch M, Duigou T, Faulon JL.
Carbonell P, et al. Among authors: duigou t.
Methods Enzymol. 2018;608:3-27. doi: 10.1016/bs.mie.2018.04.005.
Methods Enzymol. 2018.
PMID: 30173766
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RetroRules: a database of reaction rules for engineering biology.
Duigou T, du Lac M, Carbonell P, Faulon JL.
Duigou T, et al.
Nucleic Acids Res. 2019 Jan 8;47(D1):D1229-D1235. doi: 10.1093/nar/gky940.
Nucleic Acids Res. 2019.
PMID: 30321422
Free PMC article.
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Reinforcement Learning for Bioretrosynthesis.
Koch M, Duigou T, Faulon JL.
Koch M, et al. Among authors: duigou t.
ACS Synth Biol. 2020 Jan 17;9(1):157-168. doi: 10.1021/acssynbio.9b00447. Epub 2019 Dec 30.
ACS Synth Biol. 2020.
PMID: 31841626
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PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2 as Signal Integrator.
Soudier P, Zúñiga A, Duigou T, Voyvodic PL, Bazi-Kabbaj K, Kushwaha M, Vendrell JA, Solassol J, Bonnet J, Faulon JL.
Soudier P, et al. Among authors: duigou t.
ACS Synth Biol. 2022 Aug 19;11(8):2578-2588. doi: 10.1021/acssynbio.2c00138. Epub 2022 Aug 1.
ACS Synth Biol. 2022.
PMID: 35913043
Free article.
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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.
Hérisson J, Duigou T, du Lac M, Bazi-Kabbaj K, Sabeti Azad M, Buldum G, Telle O, El Moubayed Y, Carbonell P, Swainston N, Zulkower V, Kushwaha M, Baldwin GS, Faulon JL.
Hérisson J, et al. Among authors: duigou t.
Nat Commun. 2022 Aug 29;13(1):5082. doi: 10.1038/s41467-022-32661-x.
Nat Commun. 2022.
PMID: 36038542
Free PMC article.
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neo4jsbml: import systems biology markup language data into the graph database Neo4j.
Gricourt G, Duigou T, Dérozier S, Faulon JL.
Gricourt G, et al. Among authors: duigou t.
PeerJ. 2024 Jan 16;12:e16726. doi: 10.7717/peerj.16726. eCollection 2024.
PeerJ. 2024.
PMID: 38250720
Free PMC article.
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