Elnitski LL - Search Results

1

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC. Kellis M, et al. Among authors: elnitski ll. Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Proc Natl Acad Sci U S A. 2014. PMID: 24753594 Free PMC article. Review.

2

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC. Kellis M, et al. Among authors: elnitski ll. Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. doi: 10.1073/pnas.1410434111. Proc Natl Acad Sci U S A. 2014. PMID: 25275169 Free PMC article. No abstract available.

3

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

4

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

5

Association between divergence and interspersed repeats in mammalian noncoding genomic DNA.

Chiaromonte F, Yang S, Elnitski L, Yap VB, Miller W, Hardison RC. Chiaromonte F, et al. Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14503-8. doi: 10.1073/pnas.251423898. Epub 2001 Nov 20. Proc Natl Acad Sci U S A. 2001. PMID: 11717405 Free PMC article.

6

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences.

Schwartz S, Elnitski L, Li M, Weirauch M, Riemer C, Smit A; NISC Comparative Sequencing Program; Green ED, Hardison RC, Miller W. Schwartz S, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3518-24. doi: 10.1093/nar/gkg579. Nucleic Acids Res. 2003. PMID: 12824357 Free PMC article.

7

Computational prediction of cis-regulatory modules from multispecies alignments using Galaxy, Table Browser, and GALA.

Elnitski L, King D, Hardison RC. Elnitski L, et al. Methods Mol Biol. 2006;338:91-103. doi: 10.1385/1-59745-097-9:91. Methods Mol Biol. 2006. PMID: 16888352

8

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

King DC, Taylor J, Elnitski L, Chiaromonte F, Miller W, Hardison RC. King DC, et al. Genome Res. 2005 Aug;15(8):1051-60. doi: 10.1101/gr.3642605. Epub 2005 Jul 15. Genome Res. 2005. PMID: 16024817 Free PMC article.

9

PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.

Elnitski L, Riemer C, Petrykowska H, Florea L, Schwartz S, Miller W, Hardison R. Elnitski L, et al. Genomics. 2002 Dec;80(6):681-90. doi: 10.1006/geno.2002.7018. Genomics. 2002. PMID: 12504859

10

Cross-species sequence comparisons: a review of methods and available resources.

Frazer KA, Elnitski L, Church DM, Dubchak I, Hardison RC. Frazer KA, et al. Genome Res. 2003 Jan;13(1):1-12. doi: 10.1101/gr.222003. Genome Res. 2003. PMID: 12529301 Free PMC article. Review.

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