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Year | Number of Results |
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2011 | 1 |
2012 | 3 |
2013 | 2 |
2014 | 2 |
2024 | 0 |
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8 results
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Page 1
Conservation of trans-acting circuitry during mammalian regulatory evolution.
Nature. 2014 Nov 20;515(7527):365-70. doi: 10.1038/nature13972.
Nature. 2014.
PMID: 25409825
Free PMC article.
ABRA: improved coding indel detection via assembly-based realignment.
Mose LE, Wilkerson MD, Hayes DN, Perou CM, Parker JS.
Mose LE, et al.
Bioinformatics. 2014 Oct;30(19):2813-5. doi: 10.1093/bioinformatics/btu376. Epub 2014 Jun 6.
Bioinformatics. 2014.
PMID: 24907369
Free PMC article.
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Exonic transcription factor binding directs codon choice and affects protein evolution.
Stergachis AB, Haugen E, Shafer A, Fu W, Vernot B, Reynolds A, Raubitschek A, Ziegler S, LeProust EM, Akey JM, Stamatoyannopoulos JA.
Stergachis AB, et al.
Science. 2013 Dec 13;342(6164):1367-72. doi: 10.1126/science.1243490.
Science. 2013.
PMID: 24337295
Free PMC article.
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Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.
Stergachis AB, Neph S, Reynolds A, Humbert R, Miller B, Paige SL, Vernot B, Cheng JB, Thurman RE, Sandstrom R, Haugen E, Heimfeld S, Murry CE, Akey JM, Stamatoyannopoulos JA.
Stergachis AB, et al.
Cell. 2013 Aug 15;154(4):888-903. doi: 10.1016/j.cell.2013.07.020.
Cell. 2013.
PMID: 23953118
Free PMC article.
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Circuitry and dynamics of human transcription factor regulatory networks.
Neph S, Stergachis AB, Reynolds A, Sandstrom R, Borenstein E, Stamatoyannopoulos JA.
Neph S, et al.
Cell. 2012 Sep 14;150(6):1274-86. doi: 10.1016/j.cell.2012.04.040. Epub 2012 Sep 5.
Cell. 2012.
PMID: 22959076
Free PMC article.
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An expansive human regulatory lexicon encoded in transcription factor footprints.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.
Neph S, et al.
Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.
Nature. 2012.
PMID: 22955618
Free PMC article.
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The accessible chromatin landscape of the human genome.
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.
Thurman RE, et al.
Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232.
Nature. 2012.
PMID: 22955617
Free PMC article.
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Rapid empirical discovery of optimal peptides for targeted proteomics.
Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ.
Stergachis AB, et al.
Nat Methods. 2011 Nov 6;8(12):1041-3. doi: 10.1038/nmeth.1770.
Nat Methods. 2011.
PMID: 22056677
Free PMC article.
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