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The complexity of complexes in signal transduction.
Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B. Hlavacek WS, et al. Among authors: faeder jr. Biotechnol Bioeng. 2003 Dec 30;84(7):783-94. doi: 10.1002/bit.10842. Biotechnol Bioeng. 2003. PMID: 14708119 Review.
Rules for modeling signal-transduction systems.
Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Hlavacek WS, et al. Among authors: faeder jr. Sci STKE. 2006 Jul 18;2006(344):re6. doi: 10.1126/stke.3442006re6. Sci STKE. 2006. PMID: 16849649 Review.
Carbon-fate maps for metabolic reactions.
Mu F, Williams RF, Unkefer CJ, Unkefer PJ, Faeder JR, Hlavacek WS. Mu F, et al. Among authors: faeder jr. Bioinformatics. 2007 Dec 1;23(23):3193-9. doi: 10.1093/bioinformatics/btm498. Epub 2007 Oct 12. Bioinformatics. 2007. PMID: 17933853
Simulation of large-scale rule-based models.
Colvin J, Monine MI, Faeder JR, Hlavacek WS, Von Hoff DD, Posner RG. Colvin J, et al. Among authors: faeder jr. Bioinformatics. 2009 Apr 1;25(7):910-7. doi: 10.1093/bioinformatics/btp066. Epub 2009 Feb 11. Bioinformatics. 2009. PMID: 19213740 Free PMC article.
GetBonNie for building, analyzing and sharing rule-based models.
Hu B, Matthew Fricke G, Faeder JR, Posner RG, Hlavacek WS. Hu B, et al. Among authors: faeder jr. Bioinformatics. 2009 Jun 1;25(11):1457-60. doi: 10.1093/bioinformatics/btp173. Epub 2009 Mar 25. Bioinformatics. 2009. PMID: 19321734 Free PMC article.
Guidelines for visualizing and annotating rule-based models.
Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Chylek LA, et al. Among authors: faeder jr. Mol Biosyst. 2011 Oct;7(10):2779-95. doi: 10.1039/c1mb05077j. Epub 2011 Jun 7. Mol Biosyst. 2011. PMID: 21647530 Free PMC article.
83 results