Feng J - Search Results

1

JARID1B is a luminal lineage-driving oncogene in breast cancer.

Yamamoto S, Wu Z, Russnes HG, Takagi S, Peluffo G, Vaske C, Zhao X, Moen Vollan HK, Maruyama R, Ekram MB, Sun H, Kim JH, Carver K, Zucca M, Feng J, Almendro V, Bessarabova M, Rueda OM, Nikolsky Y, Caldas C, Liu XS, Polyak K. Yamamoto S, et al. Among authors: feng j. Cancer Cell. 2014 Jun 16;25(6):762-77. doi: 10.1016/j.ccr.2014.04.024. Cancer Cell. 2014. PMID: 24937458 Free PMC article.

2

Identifying ChIP-seq enrichment using MACS.

Feng J, Liu T, Qin B, Zhang Y, Liu XS. Feng J, et al. Nat Protoc. 2012 Sep;7(9):1728-40. doi: 10.1038/nprot.2012.101. Epub 2012 Aug 30. Nat Protoc. 2012. PMID: 22936215 Free PMC article.

3

DiNuP: a systematic approach to identify regions of differential nucleosome positioning.

Fu K, Tang Q, Feng J, Liu XS, Zhang Y. Fu K, et al. Among authors: feng j. Bioinformatics. 2012 Aug 1;28(15):1965-71. doi: 10.1093/bioinformatics/bts329. Epub 2012 Jun 4. Bioinformatics. 2012. PMID: 22668788 Free PMC article.

4

Canonical nucleosome organization at promoters forms during genome activation.

Zhang Y, Vastenhouw NL, Feng J, Fu K, Wang C, Ge Y, Pauli A, van Hummelen P, Schier AF, Liu XS. Zhang Y, et al. Among authors: feng j. Genome Res. 2014 Feb;24(2):260-6. doi: 10.1101/gr.157750.113. Epub 2013 Nov 27. Genome Res. 2014. PMID: 24285721 Free PMC article.

5

Local chromatin dynamics of transcription factors imply cell-lineage specific functions during cellular differentiation.

Tian R, Feng J, Cai X, Zhang Y. Tian R, et al. Among authors: feng j. Epigenetics. 2012 Jan 1;7(1):55-62. doi: 10.4161/epi.7.1.18683. Epub 2012 Jan 1. Epigenetics. 2012. PMID: 22207356 Free PMC article.

6

GeSICA: genome segmentation from intra-chromosomal associations.

Liu L, Zhang Y, Feng J, Zheng N, Yin J, Zhang Y. Liu L, et al. Among authors: feng j. BMC Genomics. 2012 May 4;13:164. doi: 10.1186/1471-2164-13-164. BMC Genomics. 2012. PMID: 22559164 Free PMC article.

7

Inference of isoforms from short sequence reads.

Feng J, Li W, Jiang T. Feng J, et al. J Comput Biol. 2011 Mar;18(3):305-21. doi: 10.1089/cmb.2010.0243. J Comput Biol. 2011. PMID: 21385036 Free PMC article.

8

Using MACS to identify peaks from ChIP-Seq data.

Feng J, Liu T, Zhang Y. Feng J, et al. Curr Protoc Bioinformatics. 2011 Jun;Chapter 2:2.14.1-2.14.14. doi: 10.1002/0471250953.bi0214s34. Curr Protoc Bioinformatics. 2011. PMID: 21633945 Free PMC article.

9

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Feng J, Meyer CA, Wang Q, Liu JS, Shirley Liu X, Zhang Y. Feng J, et al. Bioinformatics. 2012 Nov 1;28(21):2782-8. doi: 10.1093/bioinformatics/bts515. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923299

10

IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly.

Li W, Feng J, Jiang T. Li W, et al. Among authors: feng j. J Comput Biol. 2011 Nov;18(11):1693-707. doi: 10.1089/cmb.2011.0171. Epub 2011 Sep 27. J Comput Biol. 2011. PMID: 21951053 Free PMC article.

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