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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: finney a. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
MathSBML: a package for manipulating SBML-based biological models.
Shapiro BE, Hucka M, Finney A, Doyle J. Shapiro BE, et al. Among authors: finney a. Bioinformatics. 2004 Nov 1;20(16):2829-31. doi: 10.1093/bioinformatics/bth271. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087311 Free PMC article.
SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM, Bornstein BJ, Finney A, Hucka M. Keating SM, et al. Among authors: finney a. Bioinformatics. 2006 May 15;22(10):1275-7. doi: 10.1093/bioinformatics/btl111. Epub 2006 Mar 30. Bioinformatics. 2006. PMID: 16574696 Free article.
CellML2SBML: conversion of CellML into SBML.
Schilstra MJ, Li L, Matthews J, Finney A, Hucka M, Le Novère N. Schilstra MJ, et al. Among authors: finney a. Bioinformatics. 2006 Apr 15;22(8):1018-20. doi: 10.1093/bioinformatics/btl047. Epub 2006 Feb 10. Bioinformatics. 2006. PMID: 16473867 Free article.
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
Zhang F, Smith LP, Blinov ML, Faeder J, Hlavacek WS, Juan Tapia J, Keating SM, Rodriguez N, Dräger A, Harris LA, Finney A, Hu B, Hucka M, Meier-Schellersheim M. Zhang F, et al. Among authors: finney a. J Integr Bioinform. 2020 Jul 6;17(2-3):20200015. doi: 10.1515/jib-2020-0015. J Integr Bioinform. 2020. PMID: 32628633 Free PMC article.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: finney a. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
99 results